Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0667 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGTGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCGTGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAATCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCAGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 45.96 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPRAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPNRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5615677 5618535 + ClG42_05g0066700.10 Clacu05g0667 248414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0667 387 CDD F-box_AtTLP-like 35 79 - -
Clacu05g0667 387 PANTHER TUBBY-RELATED 25 386 - -
Clacu05g0667 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Clacu05g0667 387 Pfam Tub family 96 382 IPR000007 -
Clacu05g0667 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Clacu05g0667 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Clacu05g0667 387 FunFam Tubby-like F-box protein 92 387 - -
Clacu05g0667 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Clacu05g0667 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Clacu05g0667 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Clacu05g0667 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Clacu05g0667 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Clacu05g0667 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Clacu05g0667 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Clacu05g0667 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Clacu05g0667 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0667 Clacu-Chr5:5615677 Clacu05g1148 Clacu-Chr5:10543232 1.60E-119 dispersed
Clacu07g1025 Clacu-Chr7:24673048 Clacu05g0667 Clacu-Chr5:5615677 3.80E-102 transposed
Clacu08g0497 Clacu-Chr8:8779629 Clacu05g0667 Clacu-Chr5:5615677 3.80E-122 transposed
Clacu08g0848 Clacu-Chr8:18524482 Clacu05g0667 Clacu-Chr5:5615677 1.10E-119 transposed
Clacu05g0667 Clacu-Chr5:5615677 Clacu06g0531 Clacu-Chr6:6053206 3.00E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47632 PF01167 Tub 5.30E-110 CL0395 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0667 K19600 - csv:101217713 770.0