Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0668 ATGGGGTGTGTTTTTGGGCGAGAGGTATCTGAGAATCCCGTCCAGAAAGAAGAGGAGGAGGAGAGACAGAAGGCGGAGGAGGAAATTAGGGTTTCTGTCAAACCGGAGGTTTCTCAGGTTCAGGCTAATAATGCTCGCAATGGTGGAAGTAGGAAGGAGGTTGAAAATGACAGAGGTTCGAGGCAGAGAAGTGAGCGGCGGCGAAGGCCGAATCCGAGATCGAGTAATCCGCCGAAACATGTGCATGGCGAGCAAGTCGCCGCTGGATGGCCTTCTTGGCTTTCCGCCGTCGCCGGTGAGGCTATCAACGGATGGATTCCACGCCGTGCCGACTCTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACATATAGTAATGTGTACAAAGCAAGGGACACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGATTTATGGCCCGAGAAATTCTCATCCTGCGACGTCTGGATCATCCCAATGTTGTAAAACTCGAAGGTTTAGTGACGTCCCGGATGTCTTGTAGTTTATATCTTGTATTTGAATACATGGAGCACGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACAGAACCACAGGTTAAATGCTACATGCACCAATTGTTATCAGGGCTCGAACACTGTCATAATCGTCATGTCCTGCATCGAGATATAAAGGGATCGAATCTTCTGATTGGTAACGATGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCCGGAAAACCTATCATGCCCGGTCGCACAGAGGTTGAGCAGCTGCATAAGATATTTAAGTTATGTGGCTCTCCTACAGACGAATACTGGAAAAAGTCAAGGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAGCAGAGACATTTAAAGATTTCCCACCATCGTCTCTGCCACTAATTGAGACACTTCTTGCAATCGACCCAGCTGAACGCCTGACCGCCACCGCTGCATTACATAGTGAATTTTTCACTACCAAACCATATGCTTGTGAACCTTCCAGCCTCCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTCCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGTAGATGGGGTGAAAAAATCACGGGCACGTGATAGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGGCGACGTCTCATAACACACGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCGCTCGGATCTTCGCATCATATTGATCCAATCTACGATCCTCCTGACGTTCCATTTAGCACAATGAATTTCTCGTATCCAAAAGCAAACATTCACACATGGTCTGGTCCTTTGATGGATCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGCGACGGGCATTCATCAAAATCATCTAAAGACTTACGAAAAGATAAAAATTCAGTTCGGATCTAA 1716 47.03 MGCVFGREVSENPVQKEEEEERQKAEEEIRVSVKPEVSQVQANNARNGGSRKEVENDRGSRQRSERRRRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTDEYWKKSRLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHIDPIYDPPDVPFSTMNFSYPKANIHTWSGPLMDPAAVGAPRRKKHTAGDGHSSKSSKDLRKDKNSVRI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5621629 5625442 - ClG42_05g0066800.10 Clacu05g0668 248415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0668 571 MobiDBLite consensus disorder prediction 532 571 - -
Clacu05g0668 571 MobiDBLite consensus disorder prediction 50 72 - -
Clacu05g0668 571 SMART serkin_6 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0668 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0668 571 MobiDBLite consensus disorder prediction 541 571 - -
Clacu05g0668 571 MobiDBLite consensus disorder prediction 11 33 - -
Clacu05g0668 571 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0668 571 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Clacu05g0668 571 PANTHER CELL DIVISION PROTEIN KINASE 112 397 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Clacu05g0668 571 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0668 571 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Clacu05g0668 571 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
Clacu05g0668 571 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
Clacu05g0668 571 MobiDBLite consensus disorder prediction 1 85 - -
Clacu05g0668 571 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Clacu05g0668 571 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Clacu05g0668 571 CDD STKc_CDK9_like 113 397 - -
Clacu05g0668 571 MobiDBLite consensus disorder prediction 477 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1673 Clacu-Chr2:30168315 Clacu05g0668 Clacu-Chr5:5621629 1.10E-225 dispersed
Clacu03g1683 Clacu-Chr3:30590190 Clacu05g0668 Clacu-Chr5:5621629 6.60E-234 dispersed
Clacu04g1264 Clacu-Chr4:26742201 Clacu05g0668 Clacu-Chr5:5621629 5.70E-160 dispersed
Clacu05g0668 Clacu-Chr5:5621629 Clacu11g0603 Clacu-Chr11:5811665 1.80E-151 dispersed
Clacu01g1652 Clacu-Chr1:28617829 Clacu05g0668 Clacu-Chr5:5621629 3.70E-120 transposed
Clacu02g2462 Clacu-Chr2:37553016 Clacu05g0668 Clacu-Chr5:5621629 2.00E-92 transposed
Clacu03g0394 Clacu-Chr3:4379818 Clacu05g0668 Clacu-Chr5:5621629 2.90E-203 transposed
Clacu04g0299 Clacu-Chr4:9917996 Clacu05g0668 Clacu-Chr5:5621629 1.90E-10 transposed
Clacu05g1093 Clacu-Chr5:9786229 Clacu05g0668 Clacu-Chr5:5621629 2.90E-183 transposed
Clacu06g1552 Clacu-Chr6:26432049 Clacu05g0668 Clacu-Chr5:5621629 9.30E-57 transposed
Clacu08g0080 Clacu-Chr8:1654864 Clacu05g0668 Clacu-Chr5:5621629 1.30E-161 transposed
Clacu08g0468 Clacu-Chr8:7526495 Clacu05g0668 Clacu-Chr5:5621629 6.40E-123 transposed
Clacu08g1882 Clacu-Chr8:28070447 Clacu05g0668 Clacu-Chr5:5621629 1.80E-65 transposed
Clacu11g0205 Clacu-Chr11:1760002 Clacu05g0668 Clacu-Chr5:5621629 5.30E-172 transposed
Clacu11g0376 Clacu-Chr11:3441762 Clacu05g0668 Clacu-Chr5:5621629 1.30E-33 transposed
Clacu11g1574 Clacu-Chr11:26883467 Clacu05g0668 Clacu-Chr5:5621629 7.50E-64 transposed
Clacu11g2083 Clacu-Chr11:31652544 Clacu05g0668 Clacu-Chr5:5621629 1.70E-50 transposed
Clacu02g1622 Clacu-Chr2:29663842 Clacu05g0668 Clacu-Chr5:5621629 1.10E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73552 PF00069 Pkinase 2.80E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0668 K08819 - csv:101217952 1082.01