Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0679 ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCCGATGAAGATGGTAATGGTGTGAAAGAAGCTACTAAGAAGGATTCAGCCAAGGATGGCTCCACCGCTCAGTCTCACCATGTTAGAAGAGTGAGCTCAGATAAATCGAAGTCACGGAGTGTATCTGATGCTAAGAAGGAGCCAACCGTTCAAAAGGATGGAACAACAGCACATATTGCTGCTCAAACATTTACATTCCGGGAGCTTGCTACAGCGACGAAGAACTTTAGATCAGAATGCTTGCTCGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCACTTGGAGAGCACAGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTTTGGTGGAGGTTCTAATGCTTAGCCTGTTACATCACCCTAATCTTGTTAACTTGATAGGCTATTGTGCTGACGGGGATCAACGTCTTCTTGTTTATGAGTTCATGCCATTGGGTTCATTGGAAGATCATTTGCATGACCTTCCTCCAGATAAGGAGCCCTTGGATTGGAATACGAGAATGAAGATTGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCAAACCCGCCTGTTATATATCGAGACTTGAAGTCGTCTAATATTCTTCTTGACGAGGGCTACCACCCCAAGCTGTCAGATTTCGGTCTTGCAAAACTGGGTCCAGTTGGTGACAAGACTCATGTCTCTACGAGAGTGATGGGAACATACGGTTACTGTGCTCCTGAGTATGCTATGACTGGCCAACTCACTCTCAAATCAGATGTATATAGTTTTGGAGTTGTCTTTTTGGAACTTATCACGGGTCGCAAGGCAATCGATAATACTAGAGGTCCAGGGGAGCATAATCTTGTGGCATGGGCTCGGCCACTTTTTAAAGATCGCCGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAGGGTCGATATCCCATGCGGGGACTTTATCAGGCATTGGCAGTTGCAGCAATGTGCTTACAGGAACAGGCTGCAACGAGACCTCTAATTGGGGATGTTGTTACTGCTTTGACGTATTTAGCTTCCCAAACTTACGATCCTAATGCAGCTGCTTCTCAAAGCAATCGAATGGGTGGATCTACCCCACGAGCCCGAGATGAGCGGAGAGGTTTTCCAGATGGACTGGATAGCCCTGATGAGCGTGGACGAGGACGTGGTTCCCCATCGAACTACAGAAACTCACCTGATTACCGAAAGAAAGACCTCCATAGGGAAATGAGTTGTGGAGGTACAGAGCTGAGCAAAATCGACACTGGAGGCGGATCTGGTCGAAAATGGGGATTGGATGAGCTAGAGCGACAAGAATCTCTGCGAGACAGTCCTGTATATACTGGGAGAGCAAGGGAAACACCAAGGAACCGCGACCTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAGAAATGAAGTTGCCAGTGCCTACTAGACTACAGGTAAAAATTGCAGGAAGAAGAGGAAGGAAAGATTCAGATTACAAAACTACAGTCTGGTGGATTATGGAGAGGCATAGATTGTTGACAGTGGCGATTTTTGCTTGCCTGATCGCTTTTTCCGTCGGAAGGGAGTTCAGATTGAACCACAAGCACAGCGGTGATGATATTTCCTTTAACCATACTCTTGCCGAAATCTTGGTGGAGTATGCTTCTGCGGCATACATATCTGATTTAACGGAACTGTTTACTTGGACATGCACAAGATGCGATGACCTGACTCAGGGGTTTGAAGTTATAGAACTGGTTGTTGATGTCCAGCACTGTCTACAGGCATATGTTGGAGTAGCAAAGAGTCTAAATGCTGTCATTATTGCTTTTAGAGGAACTCAAGAAAACAGCGTACAGAACTGGATTGAAGACCTATACTGGAAGCAGCTTGACCTGATGTACCCTGGCATGCCAGATGCAATGGTGCACCATGGGTTTTATTATGCCTATCACAATACAACAATACGCCCTGCAATATTAAGTGCTGTCGATAGAGCCAGGAAGTTCTATGGTAACCTTGACATCATGGTGACTGGACATTCAATGGGTGGGGCAATGGCAGCATTTTGTGGCCTTGATCTTGCAGTTAACTACAATTCCCAGAATGTCCAGGTTATGACATTTGGACAACCTCGTATTGGCAATGCAGTATTTGCATCTTACTATAGCAATATAGTGCCAAATTCGTTTCGGGTTACGAATGGAAATGATGTCGTCCCCCATTTGCCTCCATTTTATGCTTATTTTCCTAAAAAAACATATCACCATTTTCCTAGAGAGGTTTGGCTTTATAATGTTGGATTCGGAAGTTTTGTTTATCAAGTTGAAAAGGTTTGTGATGATTCTGGTGAAGACCCATCTTGTAGCAGGTCTGTCTCAGGGAAAAGTATTTCAGATCATTTGGTGTACTATGGTGTTGAGTTAAGTAGTCCAGCATGGAGATCATGTAGATTTGTAATGGATCCTCCTCTGGCGGCATACGGAGCAACAGATCTGAACGGAAACCGAGTTTTCTCTAGGGATCCTGGAATTCCTCTTATCAGACTGAACAAACAATCGGGAACAGGCAAAGTTTTCAAAGATTTAGGGGCTTTAAGTTCGAGGGATCCAGGAGTCAAGAGCGAATAG 2676 45.1 MGGCFPCFGSSDEDGNGVKEATKKDSAKDGSTAQSHHVRRVSSDKSKSRSVSDAKKEPTVQKDGTTAHIAAQTFTFRELATATKNFRSECLLGEGGFGRVYKGHLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRMGGSTPRARDERRGFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDLHREMSCGGTELSKIDTGGGSGRKWGLDELERQESLRDSPVYTGRARETPRNRDLNRERAVAEAKEMKLPVPTRLQVKIAGRRGRKDSDYKTTVWWIMERHRLLTVAIFACLIAFSVGREFRLNHKHSGDDISFNHTLAEILVEYASAAYISDLTELFTWTCTRCDDLTQGFEVIELVVDVQHCLQAYVGVAKSLNAVIIAFRGTQENSVQNWIEDLYWKQLDLMYPGMPDAMVHHGFYYAYHNTTIRPAILSAVDRARKFYGNLDIMVTGHSMGGAMAAFCGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNSFRVTNGNDVVPHLPPFYAYFPKKTYHHFPREVWLYNVGFGSFVYQVEKVCDDSGEDPSCSRSVSGKSISDHLVYYGVELSSPAWRSCRFVMDPPLAAYGATDLNGNRVFSRDPGIPLIRLNKQSGTGKVFKDLGALSSRDPGVKSE 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5690129 5702288 - ClG42_05g0067900.10 Clacu05g0679 248426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0679 891 MobiDBLite consensus disorder prediction 417 433 - -
Clacu05g0679 891 Gene3D alpha/beta hydrolase 559 827 IPR029058 -
Clacu05g0679 891 Gene3D Phosphorylase Kinase; domain 1 56 162 - -
Clacu05g0679 891 Pfam Lipase (class 3) 623 761 IPR002921 GO:0006629(InterPro)
Clacu05g0679 891 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Clacu05g0679 891 SMART serkin_6 86 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0679 891 FunFam Serine/threonine-protein kinase PBS1 59 162 - -
Clacu05g0679 891 PANTHER OS07G0668900 PROTEIN 35 379 - -
Clacu05g0679 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0679 891 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524(InterPro)
Clacu05g0679 891 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Clacu05g0679 891 MobiDBLite consensus disorder prediction 1 64 - -
Clacu05g0679 891 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0679 891 MobiDBLite consensus disorder prediction 16 62 - -
Clacu05g0679 891 CDD Lipase_3 559 779 - -
Clacu05g0679 891 Pfam Protein kinase domain 90 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0679 891 MobiDBLite consensus disorder prediction 384 409 - -
Clacu05g0679 891 MobiDBLite consensus disorder prediction 372 452 - -
Clacu05g0679 891 SUPERFAMILY alpha/beta-Hydrolases 559 823 IPR029058 -
Clacu05g0679 891 CDD STKc_IRAK 92 361 - -
Clacu05g0679 891 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2412 Clacu-Chr1:34709858 Clacu05g0679 Clacu-Chr5:5690129 1.40E-42 dispersed
Clacu02g1413 Clacu-Chr2:27401668 Clacu05g0679 Clacu-Chr5:5690129 1.90E-160 dispersed
Clacu02g2129 Clacu-Chr2:34441134 Clacu05g0679 Clacu-Chr5:5690129 6.10E-132 dispersed
Clacu05g0679 Clacu-Chr5:5690129 Clacu10g2037 Clacu-Chr10:33832738 1.50E-149 dispersed
Clacu07g1424 Clacu-Chr7:29004852 Clacu05g0679 Clacu-Chr5:5690129 9.20E-08 dispersed
Clacu09g0150 Clacu-Chr9:1426123 Clacu05g0679 Clacu-Chr5:5690129 3.50E-68 dispersed
Clacu03g1114 Clacu-Chr3:20915304 Clacu05g0679 Clacu-Chr5:5690129 5.00E-122 transposed
Clacu06g0187 Clacu-Chr6:2129260 Clacu05g0679 Clacu-Chr5:5690129 2.10E-174 transposed
Clacu06g0527 Clacu-Chr6:6025864 Clacu05g0679 Clacu-Chr5:5690129 1.20E-121 transposed
Clacu09g1069 Clacu-Chr9:10154840 Clacu05g0679 Clacu-Chr5:5690129 7.70E-125 transposed
Clacu10g0535 Clacu-Chr10:6437837 Clacu05g0679 Clacu-Chr5:5690129 4.00E-138 transposed
Clacu03g1718 Clacu-Chr3:30989784 Clacu05g0679 Clacu-Chr5:5690129 1.20E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73553 PF00069 Pkinase 3.60E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0679 - - - 0.0