Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0686 ATGAAGCCGTACGGTCACTCTCTTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCACGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCGGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCGGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAATTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGTACTTGA 1443 49.83 MKPYGHSLEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRT 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5782483 5785934 - ClG42_05g0068600.10 Clacu05g0686 248433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0686 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872(InterPro)
Clacu05g0686 480 Gene3D - 90 171 - -
Clacu05g0686 480 Gene3D - 291 338 - -
Clacu05g0686 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 MobiDBLite consensus disorder prediction 403 480 - -
Clacu05g0686 480 MobiDBLite consensus disorder prediction 1 44 - -
Clacu05g0686 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 MobiDBLite consensus disorder prediction 278 305 - -
Clacu05g0686 480 MobiDBLite consensus disorder prediction 424 480 - -
Clacu05g0686 480 MobiDBLite consensus disorder prediction 278 299 - -
Clacu05g0686 480 FunFam CCCH type zinc finger protein 300 385 - -
Clacu05g0686 480 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Clacu05g0686 480 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 Gene3D - 37 89 - -
Clacu05g0686 480 Gene3D - 347 395 - -
Clacu05g0686 480 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872(InterPro)
Clacu05g0686 480 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 118 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Clacu05g0686 480 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872(InterPro)
Clacu05g0686 480 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872(InterPro)
Clacu05g0686 480 PANTHER PROTEIN PHOSPHATASE RELATED 38 376 IPR050974 GO:0003729(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1056 Clacu-Chr3:19003619 Clacu05g0686 Clacu-Chr5:5782483 7.90E-22 dispersed
Clacu05g0686 Clacu-Chr5:5782483 Clacu09g2311 Clacu-Chr9:37864727 2.70E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47635 PF00642 zf-CCCH 1.30E-07 CL0537 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0686 - - - 0.0