Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0690 ATGCTCGCACTGTTTGCTCTATGCTTTGGACCTAGACGCGCTTTGACGGGGACCAGCCATTTGAAAATCGTTTCCGCTTCTCCAGTTGTAACGGTTTTCTTTGAGTTCTCCTATGCAACTGACGGGAAGCAGAGCAGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTCAATAAGCGGTTTTCTACTGCTAACGAGGCCTCCTCAAGCAAGTACGTGGAAGATGCTAGCAAAAGCAAGCAAAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCGCAATGGAGTAAGGACGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCCGCTGCAGTAAGGAACCGTTCTACAGAAATGGTTGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAACGAAGATTCTGGAGCAATAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAGTAACAACTCTAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACACCACGTGTTCCTGTATCATATTCATATGATAAAGATAGCAGAGAGAAGCTTTTTTCACCCTCCCGACATAATAGCAAGGTGAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCTCAACTTTCACAAACACCAAATCCAAAAATAGAAGGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGACATGATGAGCATGAAGTTTCGTTGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAACACAGACTATGACCTGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATTAAGGAAGCTTGCAGTGGGACGGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTAGATGTAAAATCTGTGAGATCCTCTTTTAAGGGCCCGAGGAAAAGAAGTAAGAAAGCTCTTTTCGGAGATGAATCTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCAGACACAAATGCTGAGAGTGAGCCTTCTGCTAAGGTTAAAGAAGAAAATCCTGATGTCACGGACAAGTCTAAAATGAAAGGGAGCCATCCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAGACGGGAAAAGCTTTTGGCAACAATGTCGGTCCTATTCCTGAAGCAGAGGGAATTCAAGGATCCAATAATGGAAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAAATATCATCTAAAGATGAAGATAACAATGATTCTCGTGTCAATGACAATCTGAAAATCAAGGCTGCAGATGAAGCAAAGAGTTCCGTTGGTAAAGTTAAACGTTCCCCTCATAATGCTGGACCTGCAAAGTCTGGCAAAATATCAAAACCTCTAGATCATCACTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAACACAAGTTCTAACAAATAATCCAACCAGCTTACCTACCAAACTTAGGAGCAGGCGGAAGATGAACCTGGGGAAGCCACAGAGAGATTCAAAGCTTGCTGATAATACTTCGATCGATCAACTCAATATAACTGCTCAATCAATAGATGATAGACCACATGATCTCAAGGAGCGGCATTCTAATTGCCTATCTTGGCATAAACTGCGCAGATGGTGTGTTTTTGAGTGGTTCTATAGTGCAATCGATTTTCCATGGTTTGCAAAATGTGAGTTCGTAGAGTACTTAAATCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTTGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGACCACGGAGATTCTCAGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGAGTCATTGCCATTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGGGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGGCTCTTGATAAAATATTTGGGAATCTCAACGATGCTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATGAAATCAACCAGCAATGATAAACTTGAAAGCACGGAGGGTTCTGTGTATATTTCCCCTTCCACTCATCACATCAACAAATTAATTAAACAAGCAAAGGTTGACCTTGGGTGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATTCAACAGGAGGCAAGTTCCCAACCTTCTGCCCTCGCTCAAATTCAAGCAAAAGAAGCTGATGTTCATGCTCTTTCTGAATTGTCACGTGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGTTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTACTATTACAGTTGAATGAAGTTAATGAACAGGTTTCCTCTGCTCTGTATTGCTTGAGGCAGCGCAATACGTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATTTGGGTGACCCTTGTTCTCATTCTCAAGAACCCGGTTCCCATGTGGCTGAAATTGTTGGAAGTTCTAGAGCAAAGGCTCAAACAATGATCAATGAAGCAATGCAGGCAATTCTAGCTCTGAGAAAAGGAGAAGGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTGAGTAATAGACTCTCCGTGGATGATTTGGCCTTGCCAACTGTGAGAACAACAGCTGCAGATACTAGTAATGCCGCTCCAGTATCTCAGAATCATTTCAATGCGTGTACATCAAACCTGTCGAGTGCTAATTATGTAGTTGGTCCCAAGTCCAATGGCCCATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAACGACAGTTTCCACCATCTGATGTCGCTCAAGTACTGGATTCTGCTGTCACTAGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCGGAGATACAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTTATACCCACATAG 3642 42.28 MLALFALCFGPRRALTGTSHLKIVSASPVVTVFFEFSYATDGKQSRLLKLMAPSRKSRSVNKRFSTANEASSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSGAIRKPQKRLRGKSRSNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSREKLFSPSRHNSKVKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRSESDMMSMKFRCSEMDEGGCELSLGSTGADNTDYDLGKNTREIQRKGKRYYGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDLDVKSVRSSFKGPRKRSKKALFGDESSAFDALQTLADLSLMMPDTNAESEPSAKVKEENPDVTDKSKMKGSHPVAGAEISALKTSKTGKAFGNNVGPIPEAEGIQGSNNGNRKRKLKSSPFKISSKDEDNNDSRVNDNLKIKAADEAKSSVGKVKRSPHNAGPAKSGKISKPLDHHSSSSTDHKREDGDYALSTTQVLTNNPTSLPTKLRSRRKMNLGKPQRDSKLADNTSIDQLNITAQSIDDRPHDLKERHSNCLSWHKLRRWCVFEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVALDKIFGNLNDAKINGLLKEAKIEDYMKSTSNDKLESTEGSVYISPSTHHINKLIKQAKVDLGCSNLQAKFGLSETVGIQQEASSQPSALAQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQVSSALYCLRQRNTYQGTSPLMFLKPVHDLGDPCSHSQEPGSHVAEIVGSSRAKAQTMINEAMQAILALRKGEGNLENIEEAIDFVSNRLSVDDLALPTVRTTAADTSNAAPVSQNHFNACTSNLSSANYVVGPKSNGPSDKTEVEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVTSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5824711 5841311 + ClG42_05g0069000.10 Clacu05g0690 248437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 460 478 - -
Clacu05g0690 1213 SMART sant 93 141 IPR001005 -
Clacu05g0690 1213 CDD SANT 97 131 IPR001005 -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 288 307 - -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 530 563 - -
Clacu05g0690 1213 SMART DIRP_2 681 782 IPR033471 -
Clacu05g0690 1213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 131 IPR017930 -
Clacu05g0690 1213 Coils Coil 939 962 - -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 454 597 - -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 253 272 - -
Clacu05g0690 1213 Coils Coil 1065 1085 - -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 288 304 - -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 579 597 - -
Clacu05g0690 1213 SUPERFAMILY Homeodomain-like 92 139 IPR009057 -
Clacu05g0690 1213 PANTHER LIN-9 51 1213 IPR010561 GO:0000003(PANTHER)|GO:0003677(PANTHER)|GO:0005654(PANTHER)|GO:0006351(InterPro)|GO:0006357(PANTHER)|GO:0017053(InterPro)|GO:0051726(PANTHER)
Clacu05g0690 1213 Pfam Myb-like DNA-binding domain 96 131 IPR001005 -
Clacu05g0690 1213 Gene3D - 35 149 - -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 195 211 - -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 166 211 - -
Clacu05g0690 1213 Coils Coil 733 753 - -
Clacu05g0690 1213 ProSiteProfiles SANT domain profile. 92 129 IPR017884 -
Clacu05g0690 1213 Pfam DIRP 680 781 IPR033471 -
Clacu05g0690 1213 MobiDBLite consensus disorder prediction 166 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0690 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1600 Clacu-Chr2:29340320 Clacu05g0690 Clacu-Chr5:5824711 4.90E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47638 PF06584 DIRP 2.50E-30 No_clan Clacu TF