Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0701 ATGCATAATACTTCTTCTTCAATTCATCCCCATTTCCTTCAATTCCCTCCTCACCACCGCCTCTGTCATATAGTATGCTTCAAGAAGCTTCAACAAAACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGCCTGGACTTCCAAGGATCAGCAGTTTCTCTTGCTTATCTGGTGCTGCATTGAGTGCTAATGCTACCCTAGCGAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATTCTGCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTTCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTTTCAAACTTAAGTTGCAGTCCATCTACCCCAACGTCTGAATATGATTCATACTTGTTGAAATCCATGAGTGCTCCATCCGGAAGTGAAGGTTTCCTTAATGTTAAGGAAGTGCAAGTGGCAGGTGGAGCTGCCGGTGAGGACAGGGTTCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACATTGTACGAAACCATTGTATTTCATTTTAACCTACTAGATTGGGAAGCTAAGAATGAAACCTCCGACCGTATGGATATGGATAATTCACATCTTCTTGATGATAGTAGCATTACTCAAGGAAGATTTTCTCCTTTCGGAAACAATAGTAAAATTGCTTCAGATATCCCCAATTTATTAGAGAACCATTCATATTCCAAAGCAGGAATGACAAACTGTTCTCTAAGGCATGGGGTGTTCGATAGCCTCCAGCGTGCGCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAAGATCGTCCTGATTTAGTTTCTGTTGGGTCATGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTACACGCTAAATTTGGGTGATAGTAGAGCAGTACTAGCTACCCTTGATGAGGGTGCTATGAGAGGGAATGGGGGACTGAAAGCTGTCCAGCTCACTGAGAGTCACACTGTGGATAATGAACTTGAAAGAGCACAGTTACAACATGATCATCCTGATGATCCGGCAATCATAGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCATTTGGAGTTGGCTACTTGAAGACGAAAAAATTTAATGATGCTTTGATGGGTATTCTTCGAGTCCGTAACCTAATAAGCCCTCCCTATATTTCCACTCAACCGGCATTGTCTATCCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGAAGTGATGGTTTATTTGACTTTTTTGGCAATGAGGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGCGATCCTGCAAAATTTTTACTGGAGCAGCTCCTATTGAAAGCAGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGCAGGAGAAGGAAATATCATGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATTCAACCTCTAAGATAA 1605 41.56 MHNTSSSIHPHFLQFPPHHRLCHIVCFKKLQQNLRENLKLALVINAMPGLPRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFHFNLLDWEAKNETSDRMDMDNSHLLDDSSITQGRFSPFGNNSKIASDIPNLLENHSYSKAGMTNCSLRHGVFDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNGGLKAVQLTESHTVDNELERAQLQHDHPDDPAIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSIHRISKSDCFVIVGSDGLFDFFGNEEAVNLVHSYILSNPTGDPAKFLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSIQPLR 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5932943 5937794 - ClG42_05g0070100.10 Clacu05g0701 248448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0701 534 ProSiteProfiles PPM-type phosphatase domain profile. 148 517 IPR001932 -
Clacu05g0701 534 Gene3D - 128 526 IPR036457 -
Clacu05g0701 534 Pfam Protein phosphatase 2C 280 468 IPR001932 -
Clacu05g0701 534 SUPERFAMILY PP2C-like 162 518 IPR036457 -
Clacu05g0701 534 CDD PP2Cc 161 517 IPR001932 -
Clacu05g0701 534 SMART PP2C_4 139 515 IPR001932 -
Clacu05g0701 534 PANTHER PROTEIN PHOSPHATASE 2C 157 515 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2074 Clacu-Chr2:34000789 Clacu05g0701 Clacu-Chr5:5932943 1.10E-62 dispersed
Clacu05g0701 Clacu-Chr5:5932943 Clacu10g0184 Clacu-Chr10:2126272 2.20E-58 dispersed
Clacu05g0701 Clacu-Chr5:5932943 Clacu04g0864 Clacu-Chr4:22995890 5.00E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0701 - - - 0.0