Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0738 ATGTCTACAGCCAGTTCGAGTTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCGGCTGGCCTTCGTGTTCTGGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAGTCGAGCCGAGGATGCACTGTCTCTTCTCAGACAGTACAAAAACGGGTTCGATATCGTTTTGAGTGACGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCACGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGATGTGTTGACGATGCAGATCGGCAGCAAAAAACTAATGAAGATGCAGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAATTCAAAGAGAAGGAAGGATGACGTTGAAGACCCTGAGGAGAGGGACGATTCGTCGACCCTAAAGAAACCAAGGGTCGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTACCTGAGAAGACTAAGTGGAATCACGCAACACCAGAGTAATTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGTCCCGTCGATGAATGGCCTTGATCTTCAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCCGGCATGCCTATGCCTCTTGTCGATCAGAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTCGGTGATGGGCAACAACCACACTTGAATGGTAATAAGCCAATGAACCTACTTCATGGAATTCCAACAACTATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAAGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTCGAGCGCAGATCCTTAACGAAAGCACCTCAACTAGCGTAACAAGGCTTCCACCAACAATGCAGCAGTCAATTTTGCCGAATGGAACTACTGGTGCGGTTTTGGCTAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCTTGAATCAAACTGCAGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGCATTGTACCAAAGGGAAGATTTCCAGACGAGGTTAACTCCGACATTAAAGGATCTGAAGGTTTTGTATCAAGCTATGATATGTTTAGGGATCTCCATCCTCAGAAACCCCATGATTGGGACTTGCAACACGTAGGGCTGACCTTCGATACATCTCAAGGTAGTCTCGACATTCCACCTTCTGCTTTTGCTCACCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAATAGGAATGCATCTACCGCAGGCAAGGCCATGTTCTTATTGGAAGAAGGAAGTGACAATGGTAATGCACAAAGTGTGGGCCATCAACTCAACCCTCTTTTCGTCGATGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTCCTGATACTAGCAATCAAACAGACCTTTTCTCTGACCATTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAAGGAAGCATTGCAACAGCTGAAAGTGAATTGGAATGGGTGTTTCATCATAATACTCCTGTTTAG 1986 44.71 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCSRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDADRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFVPSMNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGNKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGSQSSSQLMQTPQPQARAQILNESTSTSVTRLPPTMQQSILPNGTTGAVLARNEFANNSRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSDIKGSEGFVSSYDMFRDLHPQKPHDWDLQHVGLTFDTSQGSLDIPPSAFAHQGYASSQQNGQNRNASTAGKAMFLLEEGSDNGNAQSVGHQLNPLFVDGSVRVKAERAPDTSNQTDLFSDHFGQEDLMSALLKQQQGSIATAESELEWVFHHNTPV 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6207635 6210793 + ClG42_05g0073800.10 Clacu05g0738 248485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0738 661 PIRSF RR_ARR_type-B 5 651 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Clacu05g0738 661 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Clacu05g0738 661 CDD REC_typeB_ARR-like 26 140 - -
Clacu05g0738 661 Gene3D - 201 263 - -
Clacu05g0738 661 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Clacu05g0738 661 FunFam Two-component response regulator 200 263 - -
Clacu05g0738 661 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Clacu05g0738 661 SUPERFAMILY CheY-like 23 147 IPR011006 -
Clacu05g0738 661 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
Clacu05g0738 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 346 IPR045279 GO:0009736(InterPro)
Clacu05g0738 661 Gene3D - 24 158 - -
Clacu05g0738 661 MobiDBLite consensus disorder prediction 154 202 - -
Clacu05g0738 661 FunFam Two-component response regulator 24 161 - -
Clacu05g0738 661 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Clacu05g0738 661 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Clacu05g0738 661 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Clacu05g0738 661 MobiDBLite consensus disorder prediction 180 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0738 Clacu-Chr5:6207635 Clacu05g1796 Clacu-Chr5:27168716 6.00E-90 dispersed
Clacu05g0921 Clacu-Chr5:8148466 Clacu05g0738 Clacu-Chr5:6207635 4.80E-45 transposed
Clacu06g0072 Clacu-Chr6:874565 Clacu05g0738 Clacu-Chr5:6207635 2.80E-40 transposed
Clacu08g1900 Clacu-Chr8:28194833 Clacu05g0738 Clacu-Chr5:6207635 9.90E-81 transposed
Clacu05g0738 Clacu-Chr5:6207635 Clacu06g0463 Clacu-Chr6:5422022 1.20E-215 wgd
Clacu05g0738 Clacu-Chr5:6207635 Clacu09g0545 Clacu-Chr9:4653005 1.30E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47641 PF00072 Response_reg 1.50E-22 CL0304 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0738 K14491 - csv:101209013 1245.72