Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0739 ATGGCCTTCGCCGATCTCATCTTCTTCCTCATCTTTACGGCCATACCCTTTTCGATTTCTCAGCCAACTGACCAAGCTCCACCTCCTGCCGCCGGTTCCTGCAATGGCATCTTCTTGTCCTATACTTTCGATCAAGGAACCAAGCTTCCCCCAAATCTCACTGTTCTCGCTCGCCAGCCCTACCGATTCGAGTCCACTCTCTCCATACTCAACAACGGCCTTACGGAGCTCAAGTCTTGGATGGTTTTTGTGGGGTTTCAACACGATGAGTTCTTGGTCTCCGCCTCCGGCGCTGTCCTCGCCGATGGTAATTCCTTCCCTGGTAACGTTGGTAATGGGACTGTCTTCGCTGGTTTTCCGATGACTGACTTGAAGACCGCCATTGAAACTGCTGGGGACATCACTCAGATGCAAGTCCAAGTCAAGTTACTTGGGACCCAATTTGGGGTTGCCCCTCCGAAAAGTCCGATGCCTTCGAATATATCTCTTGCAAATGATGGATATTTTTGTCCCAAGCCAACTCTACAAGGAAAGAGTGAGATGCACGTCTGTTGCACACCCGATCTACGCGTGAAAACAAATATCACAACCAGTGAAGCGTTCTTGCCTCGTCAAAATGGTGATCTAACGATTATGTATGATGTGACAAGGACATATGATTCAAGTTACTGGGCACAAGTTACAATCTCTAACCATAATCCTCTTGGTCGTCTTGACTATTGGAAATTGAGCTGGGATTGGATGAGGGATGAGTTTATCTATTCAATGAAAGGGGCTTATCCTTCGGTTGTTGATTCTACTGACTGCATTTTTGGTAGACAAGGCACTTATTATCGGGAGTTAGACTTTTCCAATGTATTAAGTTGTGAAAGAAGGCCAACTATTGTTGATTTACCTCCAACCAAGGCCAACGACACCACTCTCGGGTTGATCCCTTTCTGCTGTCGAAATGGGACAATCTTGCCATCTCATATGGACCCGACTAAGTCGATTTCTGCATTTCAGATGCAAGTGTTTAAAATGCCACCGGATCTTAATAGATCCCAGATTACGCCACCTCAGAATTGGCAGATCAGTGGCATTCTCAACCCCACATATAAATGTGGCCAGCCAGTGAGGGTAAGTCCTAGCGAATTCCCCGACTCAAGTGGTTTACCACTGAATTCGACTGCAGTAGCGAGCTGGCAGGTTGTTTGCAATATAACACATGCTAAGGATGACACCCCGAAGTGCTGTGTTTCCTTTTCATCTTACTACAATGATTCTGTCATCCCGTGCAGAACATGTGCTTGTGGATGCTCGCAAAACTCGGCCCGTACCTGTAATGCAACCTCCCCTGCAATGCTCCTCCCACCTGAAGCCCTTCTCGTTCCTTTTGAGAATAGGACCGCCATGGCTGTTGCTTGGGCTGATATTAAACATTTCCCTACTCCTAACCCGATGCCTTGCGCAGATAACTGCGGTGTCAGTATCAATTGGCATTTATATACTGATTATAGAGACGGATGGAGTGCTAGGATCACTCTCTTCAACTGGGACGAAGTGAATTTTGCAGATTGGTTTGCTGCAGTTCAGATGAACAAAGCAGCACCTGGTTTCCAGGCAATGTACTCGTTCAATGCAACCACCTTGGAATTGAATGGTTCCAACAATACTATCTTTATGCAGGGTAATCCTGGACTAAACTATCTCGTGGGAGAAACAGACGGGGCGAACCCATCAAAAGATCCACGGGTACCTGGAAAACAGCAATCTGTGATCTCATTTACAAAGAAGAACATACAAGGTCTTAACATGGCTGCTGGAGATGGGTTCCCCACAAAAGTATTCTTCAATGGGGAGGAATGCTTACTTCCAAAAATGTTCCCAGCCAACTACAGCCAAAGGAACTTAGCTTCATTCGTTTTGAGCATCCTAATGCTACTACTCGTGTTCGTGTTCATTCAGCAATAG 1953 46.34 MAFADLIFFLIFTAIPFSISQPTDQAPPPAAGSCNGIFLSYTFDQGTKLPPNLTVLARQPYRFESTLSILNNGLTELKSWMVFVGFQHDEFLVSASGAVLADGNSFPGNVGNGTVFAGFPMTDLKTAIETAGDITQMQVQVKLLGTQFGVAPPKSPMPSNISLANDGYFCPKPTLQGKSEMHVCCTPDLRVKTNITTSEAFLPRQNGDLTIMYDVTRTYDSSYWAQVTISNHNPLGRLDYWKLSWDWMRDEFIYSMKGAYPSVVDSTDCIFGRQGTYYRELDFSNVLSCERRPTIVDLPPTKANDTTLGLIPFCCRNGTILPSHMDPTKSISAFQMQVFKMPPDLNRSQITPPQNWQISGILNPTYKCGQPVRVSPSEFPDSSGLPLNSTAVASWQVVCNITHAKDDTPKCCVSFSSYYNDSVIPCRTCACGCSQNSARTCNATSPAMLLPPEALLVPFENRTAMAVAWADIKHFPTPNPMPCADNCGVSINWHLYTDYRDGWSARITLFNWDEVNFADWFAAVQMNKAAPGFQAMYSFNATTLELNGSNNTIFMQGNPGLNYLVGETDGANPSKDPRVPGKQQSVISFTKKNIQGLNMAAGDGFPTKVFFNGEECLLPKMFPANYSQRNLASFVLSILMLLLVFVFIQQ 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6212809 6215257 - ClG42_05g0073900.10 Clacu05g0739 248486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0739 650 Pfam COBRA-like protein 223 402 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Clacu05g0739 650 PANTHER COBRA-LIKE PROTEIN 7 21 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0739 Clacu-Chr5:6212809 Clacu10g0543 Clacu-Chr10:6565218 9.90E-223 dispersed
Clacu05g0739 Clacu-Chr5:6212809 Clacu07g1605 Clacu-Chr7:30624564 6.40E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0739 - - - 0.0