Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0744 ATGGGAAGAAGAAGAAAAAATATGGCAGTGACACATGAAGATCTTCTACCAAGTCGAAAGAGCTCTGAATTAGGCAGCAAAATGGGGACTTTCCTTATGATTTTGACCATCCTTTGTGGCCTATGTTGCTTCATTCTTTGCCTCATTGCTGAGTCTACTCGTTCCCAGGTGATATGGAGGGGTATGGATGAAAATAATAAGAAGGGAGAAAAGAGATGCTCGTACAGCGGCAGCGGGAAGACACCGCTGCTGTGCACGGCGAGCTCGTTTCTCGGGATGGCAGTGATAATGGTGGTGCAACATTTGTATGTGTTGATTGCAGTGAGTAAGTCACCGCCTCCTGCTCTCATTTCTTGGGATCCTTCTTTAGCAACTTCCAAATCTCTAACCTTTCAAGCTGCTTTCTTCTTCGTTTCAACATGGATAAGTTTTGCAGTGGGAGAAATTTTGTTGTTAATAGGATTGAGTGTGGAGTCGGGGCATTTGAACAACTGGTCAACTCCAAGAGAAAGCTGCTTGGTGATCAAAGAAGGTTTGTTTTCAGCTGCCGGAGTTTTTCAATTGGCCACGGTCTTCCTCGCCGCCGGCCTCTACATGACGGCGGTGCGAGCACAGAGAATGTTTGAAGAGCAAGAAAATGTGAGAAGAGAGGTGCTGGAAAGTTACCATATCCACAGTTCCCCGCCACGGTCGTCGCCGCCGCTGCAGCCAATGCCGCCGATTGCAAGAGAAGACCCTATTCAAACATCCAACCCAACACCCACCCACGTCGCTACCGCACCACTTCGCCCACACCCATCCATCAGGAATTTGATTATTCAAACAATGGAAGGGCAATTTGTTATGGTATTTTTGGTTGCATTTATTCCAATAATTTATGGCCAACATAATGTTACAATGGGTAAAATTGTGGTGGATGGAGCTACAACAATAGCAAAAACAGATGAGAATTATATTTGTATGACTATTGACTATTGGCCTTTTAATGAGTGCTCTAAAATTCCTTGTCTTTGGGATGGCAATGCATCAGTGCTCAATTTGAATTTGTCTCTTCCTACACTTACTAAGGCTGTGCAAGCTTTCAAGACTCTTAGGATTAGAGTAGGAGGTTCTTTGCAAGACAAATTAATTTATGATATTGGGAGCTTCAAGGGCAACAATAATTGTCCTCAATTTGCAAGGGACAGCAATGAAATGTTTCAAATTACTGAGGGATGTTTGTCTATGGAAAGGTGGGATGATTTAAACCAATTTTTTAATAAGACAGGGGCAATAGTGACGTTTGGCTTGAATGCATTATTGGGAAGGCATCCTACAATAGGAATGCTATGGGAAGGAGATTGGAACTACACCAATGCAGAGGACCTTATACAATACACAATTGAGAAGAACTATCATATCGATTCATGGGAGTTTGGTAATGAAATGGTTGGTCATAATAGTATTGGGGCAAATATTACTGCTGCACAATATGCAAAAGATTTGATCAAGCTTAGAGAAATCATTGATCGTTTGTACAACAAATCCCAACAAAAGCCTTTGATTGTAGCACCTAGTGCATTTTTTGATGTCCCATGGTTTGAAGATTTTGTTAACAAAACAGGTCCGGGCGTTGTCGACGTTTTCACCCATCACATATATAATATGGGTGCAGGGGATGACCCTAAGATAATCCATAGATTTGTTGATCCTAATTATCTTAGCCAAGAATCAAGTGTATTTCAACAACTTGAGAACATAGTTCAAATCCATGCCCCTTGGTCTGTCCCTTGGGTTGGAGAAGCTGGTGGATCCTATCGTGGTGGCAGTCCTAATATTTCTAATACATTTATTGATGGCTTCTGGTACTTGGATCAGCTTGCAATGGCTGCTTTGTACAATACCAAAGTATATTGTAGACAAACTTTGGTTGGTGGACATTATGGTGTTCTCTTACCCCATACTTTAGCCCCTTCACCAGATTATTATGGGGCACTTCTCTTTCACCAACTTATGGGTCCTGGTATTCTCAAAGTCGACAATAACGTCTCTTCTTATCTACGTACTTACGCTCATTGCACCAAAAGAAGAAGTGGTGTTACCATGCTTTTCATTAATCTAAGCAACCAAACAGAGTTCAGAATTGAGATTGAAAAGAAGATGAACGAGAGTTTGGCTAACAATCCAGCTCAAAGGGAGGAATATCATTTGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTGTTTTTGTTGTCGTCCCTAACTTTCAAGCCCCAGCTTGCAAATGA 2376 41.54 MGRRRKNMAVTHEDLLPSRKSSELGSKMGTFLMILTILCGLCCFILCLIAESTRSQVIWRGMDENNKKGEKRCSYSGSGKTPLLCTASSFLGMAVIMVVQHLYVLIAVSKSPPPALISWDPSLATSKSLTFQAAFFFVSTWISFAVGEILLLIGLSVESGHLNNWSTPRESCLVIKEGLFSAAGVFQLATVFLAAGLYMTAVRAQRMFEEQENVRREVLESYHIHSSPPRSSPPLQPMPPIAREDPIQTSNPTPTHVATAPLRPHPSIRNLIIQTMEGQFVMVFLVAFIPIIYGQHNVTMGKIVVDGATTIAKTDENYICMTIDYWPFNECSKIPCLWDGNASVLNLNLSLPTLTKAVQAFKTLRIRVGGSLQDKLIYDIGSFKGNNNCPQFARDSNEMFQITEGCLSMERWDDLNQFFNKTGAIVTFGLNALLGRHPTIGMLWEGDWNYTNAEDLIQYTIEKNYHIDSWEFGNEMVGHNSIGANITAAQYAKDLIKLREIIDRLYNKSQQKPLIVAPSAFFDVPWFEDFVNKTGPGVVDVFTHHIYNMGAGDDPKIIHRFVDPNYLSQESSVFQQLENIVQIHAPWSVPWVGEAGGSYRGGSPNISNTFIDGFWYLDQLAMAALYNTKVYCRQTLVGGHYGVLLPHTLAPSPDYYGALLFHQLMGPGILKVDNNVSSYLRTYAHCTKRRSGVTMLFINLSNQTEFRIEIEKKMNESLANNPAQREEYHLTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTNSISIATWSIVFVVVPNFQAPACK 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6255593 6264152 - ClG42_05g0074400.10 Clacu05g0744 248491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0744 791 SUPERFAMILY (Trans)glycosidases 314 665 IPR017853 -
Clacu05g0744 791 PANTHER HEPARANASE-RELATED 299 791 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Clacu05g0744 791 Pfam Glycosyl hydrolase family 79, N-terminal domain 301 620 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
Clacu05g0744 791 FunFam heparanase-like protein 3 338 663 - -
Clacu05g0744 791 Gene3D Glycosidases 339 663 - -
Clacu05g0744 791 MobiDBLite consensus disorder prediction 223 243 - -
Clacu05g0744 791 Pfam Protein of unknown function (DUF1218) 91 191 IPR009606 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0744 K07964 - - csv:101213640 874.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0744 Clacu-Chr5:6255593 Clacu07g0898 Clacu-Chr7:22534036 2.90E-208 dispersed
Clacu05g0744 Clacu-Chr5:6255593 Clacu06g1692 Clacu-Chr6:27600282 8.30E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g108 . . . . . Bpe14g01106 . . . . Cma06g01552 . Car06g01317 Car14g01414 Sed02g1145 Cpe08g00162 Cpe03g01340 Bhi01g01066 Tan10g1057 Cmetu06g1456 . Hepe05g1398 . Lcy11g1360 . . . . . . . . . Cone7ag0114 Cone4ag0118 . . . Cme06g00769 Blo02g00485 . . Bda13g00209 . . Bma02g00921 . . Cmo06g01551 Cmo14g01632 . . . . . . . . . . . . . Cla05g00688 Cam05g0752 Cec05g0760 . Clacu05g0744 Cmu05g0709 . . Csa03g01502 Chy06g00739 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001085 0 3 0 0 0 3 0 3 3 3 3 3 6 1 4 6 3 1 0 3 3 2 3 8 9 3 3 2 2 0 80