Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0767 ATGGATATGATATTTGTTAACAATAACACTGTTTTGGGTATCCTATGTTTTACCCTATTTACCTTGTTTGGAACTTGCTTCTCTAAAGCTTTTACAGCTAATTTTGTGTTTGGGGATTCATTGGTGGAGGTTGGAAACAACAACTACATTCCATCACTCTCCCGGGCCAACTATGTCCCAAACGGCATCGATTTCGGAAGACCGACTGGTAGATTCACAAACGGGCGAACCATTGTTGACATAATAGGTCAGGAGCTTGGGTTCAAGACATTCACTCCCCCGTACTTGGCACCTTCCACGACCGGAGCAGTGATTCTTCAAGGCGTTAACTATGCTTCTGGTTCAGCTGGAATCTTAAACAACACAGGAAAAATCTTTATTGCTCGAATCAACATGGATGCACAACTCGATAACTTTGCAAATACCAGACAAGATATCATCTCCATGATTGGCCTTCCTGCTGCCATAGATTTGCTTAGAACTTCCATTTTCTCCATAACCATTGGCTCAAATGACTTCGTTAATAACTATTTTACACCAGCCTTCTCTGATTCAGGACACCGGTTGATTCCTCCAGAGTTGTTTGTTGGCTCCATGATTTCAAGATACAGACTCCAACTCGCAAGACTCTACAATCTAGGAGCCAGAAAGATCATAGTGGTGAACGTCGGACCAATCGGATGCATTCCATATCAGAGAGATTCAAATCCTTCATTAGGAAATAACTGTGCAAATTCCCCTAACCTAATGGCTCAGTTATTCAACAACCAATTGAGAGGTCTACTCACAGAGCTCGGTGCCCGATTTCAGGATTCGAATTTCCTTTACGCAGATGCATTTCGCATCGTTCAAGATATAGTTCAGAATCACGCAACATACGGGTTTGAGAATGCCGACTCCGCATGCTGCCACATCGCCGGGCGGTACGGTGGCCTGTTTCCCTGTGGACCGCCGTCGAAAGTGTGTGTAGACAGATCGAAGTACGTGTTTTGGGATTCATTTCATCCTTCTGAAGCTGCGAACTCCATCATCGCCGGGCGGCTATTGAACGGCGACGCCATTGATATTTGGCCCATCAATATTCGAGAACTAGAACGTCGTAATTAA 1107 44.44 MDMIFVNNNTVLGILCFTLFTLFGTCFSKAFTANFVFGDSLVEVGNNNYIPSLSRANYVPNGIDFGRPTGRFTNGRTIVDIIGQELGFKTFTPPYLAPSTTGAVILQGVNYASGSAGILNNTGKIFIARINMDAQLDNFANTRQDIISMIGLPAAIDLLRTSIFSITIGSNDFVNNYFTPAFSDSGHRLIPPELFVGSMISRYRLQLARLYNLGARKIIVVNVGPIGCIPYQRDSNPSLGNNCANSPNLMAQLFNNQLRGLLTELGARFQDSNFLYADAFRIVQDIVQNHATYGFENADSACCHIAGRYGGLFPCGPPSKVCVDRSKYVFWDSFHPSEAANSIIAGRLLNGDAIDIWPINIRELERRN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6477907 6479440 + ClG42_05g0076700.10 Clacu05g0767 248514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0767 368 CDD SGNH_plant_lipase_like 32 352 IPR035669 -
Clacu05g0767 368 Gene3D SGNH hydrolase 27 351 IPR036514 -
Clacu05g0767 368 SUPERFAMILY SGNH hydrolase 153 350 - -
Clacu05g0767 368 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 29 364 IPR051238 -
Clacu05g0767 368 Pfam GDSL-like Lipase/Acylhydrolase 35 346 IPR001087 GO:0016788(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0767 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1352 Clacu-Chr2:26561534 Clacu05g0767 Clacu-Chr5:6477907 4.60E-95 dispersed
Clacu05g0767 Clacu-Chr5:6477907 Clacu05g1294 Clacu-Chr5:13063576 1.70E-73 dispersed
Clacu05g0767 Clacu-Chr5:6477907 Clacu03g0730 Clacu-Chr3:8133820 9.70E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g58 . . . . . . . . . . . Cma14g01587 . Car14g01397 . . Cpe03g01324 Bhi01g01094 . . . . . Lcy11g1334 . . . . . . . . . . Cone4ag0103 . . . Cme06g00793 . Blo07g00140 . . . Bpe13g00700 . Bma06g01464 . . Cmo14g01617 . . . . . . . . . . . . . Cla05g00710 . . Cco05g0778 Clacu05g0767 Cmu05g0733 Cre05g0807 . Csa03g01522 Chy06g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014157 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 23