Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0773 ATGGAAAAGAAATTTGAAGACTCACTGATGGGGTTTGATAATTCTGCTGGATTTTACTCTCCGGCGGTGTTTTCCGATGAGTTTCCGGCGTCGAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGACCATAAAGCTTCTGCTGCTGCTTCTTGTTCTTCTAATTCCTTTGACTTATTTAGTAGTGGAATTGAAATCCATGATTTTTACAATATTAATAATAATGATGATAATAATAATAATATTCCTTCTTCTTCTTCTTCTAATTTCTTCAATTTGCTTTCTACGGCGGCTCCGCCTCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCCTCCGAGGTTCTTAATGCTCCACCCACTCCTAATTCTTCCTCTGTTTCTTCCTCCTCCAATGAAGCTACAGCTGCCATTCAAGAAGTTGACAAGATCAACAACAACACTGAGAAGCCTTCTTCTTCTAAAGTGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGATGGTTACCGATGGCGAAAGTACGGTCAAAAAGCGGTGAAGAACAGCCCTTATCCTAGAAGCTATTATCGTTGTACGACGGCAGGGTGCGATGTGAAGAAGAGAGTAGAACGATCGTCCGGCGACCATTCGATAGTTGTTACGACGTACGAAGGTCAACACACTCACCAAAGTCCGGTAATGCCGCGAGGAAGTATCAGAGTTTTACCAGAATCCACCAACAACAGTCTCATCGCGGATCACGACACCATCGCCACTGGACTTTTATTCCAACACAACACTACCCAACCCTTCATATGTAGCTCTCCACCGCCGCCATTTCTAACAATCAACTCGTCGGTGGCGGCGGGAAGTTCCCGTCCTGCTCCTCCTCCTACTTCCTTCCCGCCACCACCGTCTCAAGCTTCTTTGGTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA 1047 45.08 MEKKFEDSLMGFDNSAGFYSPAVFSDEFPASNFDSFSSIFDMPCDDHKASAAASCSSNSFDLFSSGIEIHDFYNINNNDDNNNNIPSSSSSNFFNLLSTAAPPLSSPASTVPESSEVLNAPPTPNSSSVSSSSNEATAAIQEVDKINNNTEKPSSSKVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCDVKKRVERSSGDHSIVVTTYEGQHTHQSPVMPRGSIRVLPESTNNSLIADHDTIATGLLFQHNTTQPFICSSPPPPFLTINSSVAAGSSRPAPPPTSFPPPPSQASLVRDHGLLQDLVPLQMRKEPKDEQNG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6554892 6556457 + ClG42_05g0077300.10 Clacu05g0773 248520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0773 348 Pfam WRKY DNA -binding domain 186 243 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0773 348 ProSiteProfiles WRKY domain profile. 180 245 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0773 348 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 256 IPR044810 GO:0003700(InterPro)
Clacu05g0773 348 MobiDBLite consensus disorder prediction 105 155 - -
Clacu05g0773 348 SUPERFAMILY WRKY DNA-binding domain 177 245 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0773 348 Gene3D WRKY domain 170 246 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0773 348 MobiDBLite consensus disorder prediction 296 348 - -
Clacu05g0773 348 FunFam WRKY transcription factor 57 171 245 - -
Clacu05g0773 348 SMART WRKY_cls 185 244 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0773 348 MobiDBLite consensus disorder prediction 105 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0773 Clacu-Chr5:6554892 Clacu10g1153 Clacu-Chr10:24150158 5.80E-36 dispersed
Clacu05g0773 Clacu-Chr5:6554892 Clacu06g0428 Clacu-Chr6:5063751 7.10E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47645 PF03106 WRKY 9.20E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0773 - - - 0.0