Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0777 ATGCCAAATGGAGGAGATGGCGAAGGGGATCACGACGATGACGACGATAGGGTAAGGAATGTCGGAGCAACAAGGAGCGAGAGTTGTCAGGACAGAGGAGGAACAGTGATGGGGAAAGATGGGAAAGAATCAAAAGGAGTGGTGATGCATATTTTGATAGCGAAATTCAAAGAGGAAATCACACAGGAACAAATCGACGATATCATCAATAAATATGCTAATCTTGTCAATCTCATTGATTCTATGAAGGTTTTTCAATGGGGAAGGGATGTTAGCATTGAAGATCTACACCAAGGTTACACTCATATCTTTGAATCCACCTTTGAGAGTAAGGAAGGCATAGCAGAGTATATAGCTCATCCAGCACATATCGAATTTGCAAACTTGTTCCTTCCTACTTTAGAACAAGTTGTTGCTGTCGACTACATACCTACTGAATTGCCAAAAGAGTTGTCAACTGATGACGACAACAACAATGGCGACAATGGCGACAACGGCGAGGACGATTAA 510 42.35 MPNGGDGEGDHDDDDDRVRNVGATRSESCQDRGGTVMGKDGKESKGVVMHILIAKFKEEITQEQIDDIINKYANLVNLIDSMKVFQWGRDVSIEDLHQGYTHIFESTFESKEGIAEYIAHPAHIEFANLFLPTLEQVVAVDYIPTELPKELSTDDDNNNGDNGDNGEDD 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6592052 6597174 + ClG42_05g0077700.10 Clacu05g0777 248524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0777 169 MobiDBLite consensus disorder prediction 148 169 - -
Clacu05g0777 169 FunFam Stress-response A/B barrel domain-containing protein HS1 41 149 - -
Clacu05g0777 169 SMART Dabb_2 48 144 IPR013097 -
Clacu05g0777 169 Pfam Stress responsive A/B Barrel Domain 49 143 IPR013097 -
Clacu05g0777 169 ProSiteProfiles Stress-response A/B barrel domain profile. 48 142 IPR013097 -
Clacu05g0777 169 PANTHER - 42 146 IPR044662 GO:0009865(PANTHER)
Clacu05g0777 169 MobiDBLite consensus disorder prediction 1 41 - -
Clacu05g0777 169 SUPERFAMILY Dimeric alpha+beta barrel 48 145 IPR011008 -
Clacu05g0777 169 Gene3D - 39 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0777 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0833 Clacu-Chr1:9272320 Clacu05g0777 Clacu-Chr5:6592052 1.40E-33 dispersed
Clacu05g0777 Clacu-Chr5:6592052 Clacu05g0783 Clacu-Chr5:6669124 3.60E-39 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g215 . . . . . . . . . . . Cma14g01573 . Car14g01386 . . Cpe03g01314 Bhi01g01102 . . . . . . . . . . . . . . . . . Lsi05g01409 . . Cme06g00753 . . . . . . . . . . Cmo14g01606 . . . . . . . . . . . . . Cla05g00718 Cam05g0787 Cec05g0792 Cco05g0790 Clacu05g0777 Cmu05g0741 Cre05g0817 . Csa03g01537 Chy06g00774 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003452 1 2 1 1 1 3 1 2 3 1 3 3 1 1 1 1 2 0 1 2 1 1 1 1 1 2 1 2 1 5 47