Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g0800 | ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGACATCCGTACCGGCCGTCGTTACGCCGTCAAGATCCTTGATAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAACGTGAAATAAGTACTCTCAAGCTCCTCAGGCATCCGAATGTTGTAAGACTTTACGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTTTGGAGTGCGCCTCTGGTGGAGAATTGTTTGATAGAATTGAATCGAAGGGTAAAATGGATGAAGTTGAAGGTCGGAGGCTCTTCCAGCAGCTTATTGATGGTCTTAGCTACTGCCATGACAAAGGAGTTTACCACAGGGATCTCAAGTTGGAAAACGTGCTTGTTGATGCTAAGGGAAATATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACAACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTTCTTGCTAATAGAGGATACAATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTTTCTTCCTTTTGACGAGACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGACCCCAATCCCAATACTCGGATTACCATGGCAGGAATTAAAGAGAATGAGTGGTTCAAGACTGACTACCATCCTGCTTCTCCTGGTTATGACGACGATGATGAGGAGGGTTCACTTACTGATCAGGATGATGCCATCTCAACGCCTGATGAGCCATCTGACGTTGAAAACAGCCCAGAATCTCCTTCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTGGATTTGTCTGGCTTCTTTGAGCAAGAGGATGTCTCCGAGAGGAAGATCAGATTTACATCCAACCATTCTGCCAAAGACTTGCTTGAGAGAATCGAGGTTATCGCAACGGATATGGGATTTCGAGTTCAAAAGAAAAGTGGAAAGTTGAAATTGATTCAAGAGATAAGAAGTCAAAAAAGCCTAAGTAATCTATCATTTGTAGCCGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTATAGACAGTTGTGTGAAAGGCTGTCAAATGATTTGGGCACAAACCCAGAGCTGGAACGGCAAAATTCAAGCTCATTCGCATTAAACACTACATGCTAG | 1329 | 42.89 | MRVGKYELGKTLGEGNFGKVKLAADIRTGRRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVLECASGGELFDRIESKGKMDEVEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTAFLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKENEWFKTDYHPASPGYDDDDEEGSLTDQDDAISTPDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKLKLIQEIRSQKSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERLSNDLGTNPELERQNSSSFALNTTC | 442 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6855902 | 6858630 | + | ClG42_05g0080000.10 | Clacu05g0800 | 248547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g0800 | 442 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 304 | - | - | |
Clacu05g0800 | 442 | Gene3D | Kinase associated domain 1, KA1 | 305 | 424 | - | - | |
Clacu05g0800 | 442 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524(InterPro) | |
Clacu05g0800 | 442 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 262 | IPR011009 | - | |
Clacu05g0800 | 442 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 412 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Clacu05g0800 | 442 | MobiDBLite | consensus disorder prediction | 284 | 302 | - | - | |
Clacu05g0800 | 442 | ProSiteProfiles | Protein kinase domain profile. | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu05g0800 | 442 | SMART | serkin_6 | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu05g0800 | 442 | ProSiteProfiles | NAF domain profile. | 302 | 326 | IPR018451 | GO:0007165(InterPro) | |
Clacu05g0800 | 442 | CDD | CIPK_C | 308 | 419 | - | - | |
Clacu05g0800 | 442 | FunFam | Non-specific serine/threonine protein kinase | 1 | 85 | - | - | |
Clacu05g0800 | 442 | Pfam | Protein kinase domain | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu05g0800 | 442 | FunFam | Non-specific serine/threonine protein kinase | 304 | 426 | - | - | |
Clacu05g0800 | 442 | FunFam | Non-specific serine/threonine protein kinase | 1 | 303 | - | - | |
Clacu05g0800 | 442 | Pfam | NAF domain | 304 | 363 | IPR004041 | GO:0007165(InterPro) | |
Clacu05g0800 | 442 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu05g0800 | 442 | MobiDBLite | consensus disorder prediction | 266 | 302 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0800 | Clacu-Chr5:6855902 | Clacu06g1207 | Clacu-Chr6:22734961 | 5.50E-108 | dispersed | |
Clacu11g1685 | Clacu-Chr11:28089125 | Clacu05g0800 | Clacu-Chr5:6855902 | 9.40E-37 | dispersed | |
Clacu05g0800 | Clacu-Chr5:6855902 | Clacu06g0401 | Clacu-Chr6:4781208 | 3.80E-157 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73554 | PF00069 | Pkinase | 1.70E-70 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g0800 | K07198 | - | csv:101205987 | 848.195 |