Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0800 ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGACATCCGTACCGGCCGTCGTTACGCCGTCAAGATCCTTGATAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAACGTGAAATAAGTACTCTCAAGCTCCTCAGGCATCCGAATGTTGTAAGACTTTACGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTTTGGAGTGCGCCTCTGGTGGAGAATTGTTTGATAGAATTGAATCGAAGGGTAAAATGGATGAAGTTGAAGGTCGGAGGCTCTTCCAGCAGCTTATTGATGGTCTTAGCTACTGCCATGACAAAGGAGTTTACCACAGGGATCTCAAGTTGGAAAACGTGCTTGTTGATGCTAAGGGAAATATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACAACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTTCTTGCTAATAGAGGATACAATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTTTCTTCCTTTTGACGAGACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGACCCCAATCCCAATACTCGGATTACCATGGCAGGAATTAAAGAGAATGAGTGGTTCAAGACTGACTACCATCCTGCTTCTCCTGGTTATGACGACGATGATGAGGAGGGTTCACTTACTGATCAGGATGATGCCATCTCAACGCCTGATGAGCCATCTGACGTTGAAAACAGCCCAGAATCTCCTTCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTGGATTTGTCTGGCTTCTTTGAGCAAGAGGATGTCTCCGAGAGGAAGATCAGATTTACATCCAACCATTCTGCCAAAGACTTGCTTGAGAGAATCGAGGTTATCGCAACGGATATGGGATTTCGAGTTCAAAAGAAAAGTGGAAAGTTGAAATTGATTCAAGAGATAAGAAGTCAAAAAAGCCTAAGTAATCTATCATTTGTAGCCGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTATAGACAGTTGTGTGAAAGGCTGTCAAATGATTTGGGCACAAACCCAGAGCTGGAACGGCAAAATTCAAGCTCATTCGCATTAAACACTACATGCTAG 1329 42.89 MRVGKYELGKTLGEGNFGKVKLAADIRTGRRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVLECASGGELFDRIESKGKMDEVEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTAFLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKENEWFKTDYHPASPGYDDDDEEGSLTDQDDAISTPDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKLKLIQEIRSQKSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERLSNDLGTNPELERQNSSSFALNTTC 442
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 6855902 6858630 + ClG42_05g0080000.10 Clacu05g0800 248547
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0800 442 Gene3D Transferase(Phosphotransferase) domain 1 2 304 - -
Clacu05g0800 442 Gene3D Kinase associated domain 1, KA1 305 424 - -
Clacu05g0800 442 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Clacu05g0800 442 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Clacu05g0800 442 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu05g0800 442 MobiDBLite consensus disorder prediction 284 302 - -
Clacu05g0800 442 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0800 442 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0800 442 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165(InterPro)
Clacu05g0800 442 CDD CIPK_C 308 419 - -
Clacu05g0800 442 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Clacu05g0800 442 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0800 442 FunFam Non-specific serine/threonine protein kinase 304 426 - -
Clacu05g0800 442 FunFam Non-specific serine/threonine protein kinase 1 303 - -
Clacu05g0800 442 Pfam NAF domain 304 363 IPR004041 GO:0007165(InterPro)
Clacu05g0800 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0800 442 MobiDBLite consensus disorder prediction 266 302 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0800 Clacu-Chr5:6855902 Clacu06g1207 Clacu-Chr6:22734961 5.50E-108 dispersed
Clacu11g1685 Clacu-Chr11:28089125 Clacu05g0800 Clacu-Chr5:6855902 9.40E-37 dispersed
Clacu05g0800 Clacu-Chr5:6855902 Clacu06g0401 Clacu-Chr6:4781208 3.80E-157 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73554 PF00069 Pkinase 1.70E-70 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0800 K07198 - csv:101205987 848.195