Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0831 ATGGAGGACGATTTCGAGTTCCCGTCTGCAAGCAATGTAGACGAGGAAATGGGCTTGCCTGAGGACGAAGCGGAGAGCTCAGTTCTGAAGGTTGGCGAAGAGAAGGAGATTGGAAAGAATGGGCTGAAGAAGAAACTTGTTAAAGAAGGCGAAGGATGGGAAACTCCCGAGACTGGTGATGAAGTCGAAGTGCATTATACGGGAACCCTTCTTGATGGAACTCAATTCGATTCGAGCCGTGACCGAGGAACGCCCTTCAAGTTCAAGCTCGGGGAAGGGCAAGTGATTAAAGGATGGGATGAAGGTATTAGAACAATGAAAAAGGGTGAAAGTGCAGTTTTCACGATACCTCCTGAATTGGCCTATGGAGAGTCCGGCTCTCCTCCAACAATTCCACCGAATGCTACTCTTCAATTTGATGTTGAGCTACTTTCATGGCACAGCGTCAAAGACATCTGCCAAGATGGAGGAATCTTGAAAAAGATCCTTGTTAAAGGAGACGGCTGGGACAAACCGAAGGATTTGGACGAAGTCTCGGTTCTTTATGAGGCTCGTCTTGAAGATGGTACACTGATCTCAAAGTCTGATGGGGCCGAATTCACTGTTGAAAAAGGGTACTTCTGTCCTGCCTTGGCAACGTCCGTGAAGACCATGAAGAAGGGAGAGAAAGCTTTGTTGACTGTGAGGCCACAATATGCATTTGGGGAGTCTGGTAGGCCTGGAGCTGGAGAAGAAGGTGCTGTGCCTCCAAATGCCACACTTCAGATAACCCTTCAATTGGTTTCTTGGAAAACTGTTACAGAGGTTACTAAGGATAAGAAGGTCCTGAAGAAGACCCAGAAGGAGGGAGAAGGATATGAACAGCCAAATGAGGGAGCAGTGGTGCAAGTGAAACTAACCGGTAAACTGGCCGATGGGACGATTTTTACGAAAAAGGGTGATGATGAGAAGCCATTTGAGTTCAAAACTGACGAAGAACAAGTCATTGAAGGACTTGATTTGGCTGTGAGAAAGATGAAGAAGGGAGAAATTGCCTTGGTGACGATCCATCCACAATATGCTTTTGGATCTTCTGATTCACCCCAAGATCTAGCTGTAGTTCCTGCAAACTCAACTGTATATTATGAAGTTGAGCTAGTTTCTTTCGTCAAAGAAAAAGAATCTTGGGATCTGAACACAGCAGAAGAGAAAATAGAAGCAGCAGGTAAAAAGAAGGAAGAAGGGAATATTTTGTTCAAAGCTGGAAAATATGATAGAGCATCAAGGAGATATGAAAAGGCTGTGCGCTACATTGAATACGATACTTCTTTCAGCGATGAAGAGAAGCAACAGAGCAAGGCACTGAAGATTTCGTGCAACCTCAACAATGCTGCGTGCAAATTGAAAGTCAAAGATTACAAGCAAGCAGAGAAGCTCTGTACAAAGGTGTTGGAACTTGACAGTCGGAACGTGAAAGCTCTCTATAGAAGGGCCCAGGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCAGGATATCAAAAAAGCCCTTGAGATAGACCCAGATAACAGGGAAGTGAAGATCGAATACAGACAGTTGAAAGAGAAAGTGAGGGAATACAACAAGAGAGATGCCCAGTTCTATGGCAATATTTTTGCAAAAATGAACAAGCTGGAGCAGGCTGCTAATTCAGCAGGGAAGCAGGAGGCAGTGCCAATGACCATTGATAGCAAAGCTTAG 1722 44.77 MEDDFEFPSASNVDEEMGLPEDEAESSVLKVGEEKEIGKNGLKKKLVKEGEGWETPETGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGESAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWDKPKDLDEVSVLYEARLEDGTLISKSDGAEFTVEKGYFCPALATSVKTMKKGEKALLTVRPQYAFGESGRPGAGEEGAVPPNATLQITLQLVSWKTVTEVTKDKKVLKKTQKEGEGYEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKTDEEQVIEGLDLAVRKMKKGEIALVTIHPQYAFGSSDSPQDLAVVPANSTVYYEVELVSFVKEKESWDLNTAEEKIEAAGKKKEEGNILFKAGKYDRASRRYEKAVRYIEYDTSFSDEEKQQSKALKISCNLNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNREVKIEYRQLKEKVREYNKRDAQFYGNIFAKMNKLEQAANSAGKQEAVPMTIDSKA 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7137423 7141037 + ClG42_05g0083100.10 Clacu05g0831 248578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0831 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755(InterPro)
Clacu05g0831 573 Pfam Tetratricopeptide repeat 484 517 IPR019734 GO:0005515(InterPro)
Clacu05g0831 573 Gene3D - 32 150 IPR046357 GO:0003755(InterPro)
Clacu05g0831 573 Coils Coil 517 537 - -
Clacu05g0831 573 PANTHER PEPTIDYLPROLYL ISOMERASE 25 145 IPR050754 -
Clacu05g0831 573 SMART tpr_5 401 434 IPR019734 GO:0005515(InterPro)
Clacu05g0831 573 SMART tpr_5 450 483 IPR019734 GO:0005515(InterPro)
Clacu05g0831 573 SMART tpr_5 484 517 IPR019734 GO:0005515(InterPro)
Clacu05g0831 573 MobiDBLite consensus disorder prediction 1 34 - -
Clacu05g0831 573 SUPERFAMILY TPR-like 396 550 IPR011990 GO:0005515(InterPro)
Clacu05g0831 573 FunFam Peptidylprolyl isomerase 151 264 - -
Clacu05g0831 573 Gene3D - 151 264 IPR046357 GO:0003755(InterPro)
Clacu05g0831 573 FunFam Peptidylprolyl isomerase 265 385 - -
Clacu05g0831 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755(InterPro)
Clacu05g0831 573 FunFam Peptidylprolyl isomerase 388 544 - -
Clacu05g0831 573 SUPERFAMILY FKBP-like 28 151 - -
Clacu05g0831 573 MobiDBLite consensus disorder prediction 1 22 - -
Clacu05g0831 573 Gene3D Tetratricopeptide repeat domain 390 544 IPR011990 GO:0005515(InterPro)
Clacu05g0831 573 SUPERFAMILY FKBP-like 269 399 - -
Clacu05g0831 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 260 IPR001179 GO:0003755(InterPro)
Clacu05g0831 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 144 IPR001179 GO:0003755(InterPro)
Clacu05g0831 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755(InterPro)
Clacu05g0831 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755(InterPro)
Clacu05g0831 573 SUPERFAMILY FKBP-like 151 267 - -
Clacu05g0831 573 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515(InterPro)
Clacu05g0831 573 FunFam Peptidylprolyl isomerase 32 150 - -
Clacu05g0831 573 Gene3D - 265 389 IPR046357 GO:0003755(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0805 Clacu-Chr4:22413193 Clacu05g0831 Clacu-Chr5:7137423 1.40E-65 dispersed
Clacu05g0831 Clacu-Chr5:7137423 Clacu09g0839 Clacu-Chr9:7729431 1.00E-242 dispersed
Clacu05g0831 Clacu-Chr5:7137423 Clacu05g0881 Clacu-Chr5:7701381 1.10E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0831 K09571 - csv:101210041 1035.02