Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0833 ATGGAGAAGGAATTCTTCATGAACGATGCTGGATGCAGTTTTTATGGAATGGAAATCCAACCTAATGAGCTGAATTCAAGTGTGTTGTTTAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACGTTATTGGCGGCGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCGTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCATCAAAACCTTGCCCCATTTTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGCCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATTGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTGTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCTCAAACGGGGGTTCAAGAAGGCGAGCAGCAAAGCCCAGTTCAAAAGGTGAATTCAATGCCAATCCCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGAGAGGGATCTTCGGTTTCCGAGCAGATTACAATTGGGGAATTGGGTTTGAAAGGTAAAGCTGAAACCAACACTAGAAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGCTGCAAAAGGGAAGTCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATCCAAATCAGAAACAAAACAATGATAATTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGTCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAGGATCTCGTCCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTGAATCCAAGGATGGATTTTAACATGGAGACCCTTGTACCAAAGGATATCTTCAAAGGTCCCGGTTCTTCACCGCATACGGGTTACCCTATGGATTCATCTGTGCCCCAATTTGCATATGATTATCAATCTATGCACATGCCACCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAACAATTCTCAGTTGCCTCAGCAAGTGGTGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGCGGATACAACGAAGTCGTGAACGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGATGAGATGAAAAGTGAATTGTAG 1644 42.88 MEKEFFMNDAGCSFYGMEIQPNELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSIAGAGVESGKLSRVSSNKSFNIGGIGSQTGVQEGEQQSPVQKVNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQITIGELGLKGKAETNTRKRKSVQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDAAKGKSEAKDGTKASGDPNQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSPHTGYPMDSSVPQFAYDYQSMHMPPLHSSISNGTEKQFSVASASGVMQRNLSGQMPSGYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANDEMKSEL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7173494 7175810 - ClG42_05g0083300.10 Clacu05g0833 248580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0833 547 MobiDBLite consensus disorder prediction 236 262 - -
Clacu05g0833 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 430 IPR036638 GO:0046983(InterPro)
Clacu05g0833 547 SMART finulus 366 416 IPR011598 GO:0046983(InterPro)
Clacu05g0833 547 CDD bHLH_AtBPE_like 350 435 - -
Clacu05g0833 547 MobiDBLite consensus disorder prediction 206 351 - -
Clacu05g0833 547 Pfam Helix-loop-helix DNA-binding domain 364 411 IPR011598 GO:0046983(InterPro)
Clacu05g0833 547 MobiDBLite consensus disorder prediction 206 227 - -
Clacu05g0833 547 FunFam Basic helix-loop-helix transcription factor 357 430 - -
Clacu05g0833 547 MobiDBLite consensus disorder prediction 330 344 - -
Clacu05g0833 547 Gene3D - 357 431 IPR036638 GO:0046983(InterPro)
Clacu05g0833 547 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 140 491 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu05g0833 547 MobiDBLite consensus disorder prediction 271 329 - -
Clacu05g0833 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 410 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0833 Clacu-Chr5:7173494 Clacu09g0843 Clacu-Chr9:7767241 1.20E-67 dispersed
Clacu05g0833 Clacu-Chr5:7173494 Clacu02g0522 Clacu-Chr2:4882399 6.10E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47649 PF00010 HLH 1.20E-05 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0833 - - - 0.0