Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0841 ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCTTCACCAATCAAGTCGTTACTCAGGGTTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAAGCAACCTCGTCTTCAATGTCATTCCCTCCATTGGCTCCCAGTACTAATTCTGATTGGGCTCAATCTGGCCGTGGAATGTCCACCGATTCCGCTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGCGAAATGTTGGTCATCGGCGTGCCCATTCAGAGATCTTGACCCTCCCAGATGATATTTGTTTCGATAGTGATCTTGGTATTATTGGTGGGGCTGATGGTCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGCGATTCATCTTCCCCTCTTGTAGAAGCAGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCTCTGGGTCTGACGAAGCCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCTTTGATTGACCCCAAACGAGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCGAGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCTACTTCTTTGTCCACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAAGTTCACCTGCAAGACGGAGCTTTCACAGTATCAGGTCCATCAGGACTTGGTACTGGAATGATTCAATTGGACATGCATTAG 960 46.25 MDKEKPQCHGGGFLHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPSTNSDWAQSGRGMSTDSARFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDGAFTVSGPSGLGTGMIQLDMH 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7273579 7275800 - ClG42_05g0084100.10 Clacu05g0841 248588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0841 319 SMART brlzneu 218 282 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0841 319 FunFam probable transcription factor PosF21 221 274 - -
Clacu05g0841 319 Coils Coil 238 293 - -
Clacu05g0841 319 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0841 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0841 319 MobiDBLite consensus disorder prediction 1 86 - -
Clacu05g0841 319 Pfam bZIP transcription factor 222 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0841 319 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 299 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu05g0841 319 MobiDBLite consensus disorder prediction 17 69 - -
Clacu05g0841 319 MobiDBLite consensus disorder prediction 70 86 - -
Clacu05g0841 319 Gene3D - 221 275 - -
Clacu05g0841 319 SUPERFAMILY Leucine zipper domain 222 272 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0841 Clacu-Chr5:7273579 Clacu07g0525 Clacu-Chr7:6715184 4.20E-41 dispersed
Clacu05g0838 Clacu-Chr5:7236615 Clacu05g0841 Clacu-Chr5:7273579 1.30E-122 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47651 PF00170 bZIP_1 6.10E-09 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0841 - - - 0.0