Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g0865 | ATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCCAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACCAAACTCTAGATTCCTCTACTAGCTGTACTGATTTCGATATCCAAACCTGGCTTAGTACTGCCTTAACCAACCTCGAAACATGTCGCACCGGGTTCGCCGAGCTTAATGTCTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGTGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGTCGTCGTCTTCAATAAAGGTGGACATTGTGGTGGCTCAGGACGGGTCCGGTAATTATACGACGGTCGGAGCTGCGGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGAGGCATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTCTCCGATCAAGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTCGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGTACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTGTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGCACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTAATACTTTATATTATGGAGAGTATAAGAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACTGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCGTGGTTGCCGGATACAGAGGTCCCATTCACTCCTGGACTTTAG | 1407 | 43.0 | MTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGVVLGKETYKKGFPSWVSGGDRRLLQSSSSSSSIKVDIVVAQDGSGNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSSADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVVQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALNTLYYGEYKNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFTPGL | 468 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7575506 | 7578184 | - | ClG42_05g0086500.10 | Clacu05g0865 | 248612 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g0865 | 468 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 3 | 116 | IPR035513 | - | |
| Clacu05g0865 | 468 | Pfam | Pectinesterase | 156 | 453 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Clacu05g0865 | 468 | SMART | PMEI_2 | 1 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Clacu05g0865 | 468 | Pfam | Plant invertase/pectin methylesterase inhibitor | 4 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Clacu05g0865 | 468 | NCBIfam | pectinesterase inhibitor domain | 3 | 116 | IPR006501 | GO:0004857(InterPro) | |
| Clacu05g0865 | 468 | ProSitePatterns | Pectinesterase signature 2. | 301 | 310 | IPR033131 | - | |
| Clacu05g0865 | 468 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 117 | IPR035513 | - | |
| Clacu05g0865 | 468 | SUPERFAMILY | Pectin lyase-like | 152 | 467 | IPR011050 | - | |
| Clacu05g0865 | 468 | CDD | PMEI-like_3 | 3 | 117 | - | - | |
| Clacu05g0865 | 468 | Gene3D | - | 149 | 468 | IPR012334 | - | |
| Clacu05g0865 | 468 | PANTHER | PECTINESTERASE | 4 | 459 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Clacu05g0865 | 468 | FunFam | Pectinesterase | 150 | 468 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g0486 | Clacu-Chr1:4787243 | Clacu05g0865 | Clacu-Chr5:7575506 | 1.90E-165 | dispersed | |
| Clacu01g0639 | Clacu-Chr1:6814566 | Clacu05g0865 | Clacu-Chr5:7575506 | 7.80E-130 | dispersed | |
| Clacu02g0061 | Clacu-Chr2:626146 | Clacu05g0865 | Clacu-Chr5:7575506 | 7.90E-77 | dispersed | |
| Clacu02g0062 | Clacu-Chr2:631514 | Clacu05g0865 | Clacu-Chr5:7575506 | 6.70E-85 | dispersed | |
| Clacu05g0274 | Clacu-Chr5:2380652 | Clacu05g0865 | Clacu-Chr5:7575506 | 9.30E-109 | dispersed | |
| Clacu05g0275 | Clacu-Chr5:2395825 | Clacu05g0865 | Clacu-Chr5:7575506 | 1.30E-153 | dispersed | |
| Clacu05g0865 | Clacu-Chr5:7575506 | Clacu10g0596 | Clacu-Chr10:7775859 | 4.10E-154 | dispersed | |
| Clacu05g0865 | Clacu-Chr5:7575506 | Clacu05g0868 | Clacu-Chr5:7606781 | 4.90E-06 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g0865 | K01051 | - | csv:101211449 | 857.44 |