Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0882 ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACGAATGATGAAGCCCTAGACAGCTTCCAGGTAGCTCCAAGAACAGAAGCCCTAAAATCAACCGGTGAGTCTAAAGTAACGGAGCTCGCGGCAGCTGCTCCACCACCGGGGTTTTCAGCGGCGGCTGATGCACCACCGGCGAGTGTAGCGGTTTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACTGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAATCAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGGGCTATTTGCATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACGTATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCTACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCGCTTGCGGGTCAAGATGGGCGAGTCGTTGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTAGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAGAAGCCAAAAAAGCCTAGAAACGAGTCCACAACCATTTTCTTTCCTCCCGTCAACACTGTCACTGGTGAAGAAATGAAGATAATGTATCCTGGCGGTAACAAGCCTATTCTCACGACACCGTCCTATCAAGAACAATATAATCCGCCGTCCCCTAGCCCAGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1053 47.67 MEEKETGVSRFTVTNDEALDSFQVAPRTEALKSTGESKVTELAAAAPPPGFSAAADAPPASVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTVTGEEMKIMYPGGNKPILTTPSYQEQYNPPSPSPVTGFKISSTDNLPLSDQEPKTQSQSNCEVSC 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7714172 7718077 - ClG42_05g0088200.10 Clacu05g0882 248629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0882 350 Gene3D - 145 275 - -
Clacu05g0882 350 CDD DUF296 144 258 IPR005175 -
Clacu05g0882 350 FunFam AT-hook motif nuclear-localized protein 1-like 145 276 - -
Clacu05g0882 350 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Clacu05g0882 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Clacu05g0882 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 305 IPR039605 GO:0003680(InterPro)
Clacu05g0882 350 MobiDBLite consensus disorder prediction 29 85 - -
Clacu05g0882 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 264 - -
Clacu05g0882 350 MobiDBLite consensus disorder prediction 302 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0882 Clacu-Chr5:7714172 Clacu11g0191 Clacu-Chr11:1608732 4.90E-67 dispersed
Clacu01g0522 Clacu-Chr1:5151781 Clacu05g0882 Clacu-Chr5:7714172 2.50E-88 transposed
Clacu01g0359 Clacu-Chr1:3613399 Clacu05g0882 Clacu-Chr5:7714172 1.50E-70 wgd
Clacu05g0882 Clacu-Chr5:7714172 Clacu06g0033 Clacu-Chr6:547548 2.00E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0882 - - - 0.0