Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0891 ATGGGTTTTCGGTTCCTTATGGCGAGAAGAGGAGGAGCAATTGGATCGTGGCTCTGCATCGTTGTGGTTTTAATTTCTACGCAAATTCACGTCTCAGCCAGATCGGATAAGGAAATCAGGGAGAGATTTTATGGAAACTTGATAAACTCGACGGCTCCGACTTCCGGTGACGGTAGCATTGCCCAAATGTTCGATAAGGTTCTTGAGAAGGAGTTCTCTGACAATGATCTGCCTGAAGGTTCTGGTGGAAGCAGCTTTAATAGCAGCGTTGCTGATCAGGAGGCAGAACTGGAGACGGTAGCTAAAATCACACATGAGAAGGGCAAGAAAAATGATAGTCAAAAGGCAAATGGGACAAGGGCATTCCAATTTCAGGATGTTTTTTCTCTGGAAAATGAAGAATCTGATGATGTTACAACGTTGATTGATAAAAAAGACAATGTATTTGTGATGTCAAACAAGAAGTCAAAGTATCCAGTACTTCAAGTAGATTTGAGATTGATCTCAGACTTGGTGGTGGTTATTGTTTCTGCCGCAATTGGAGGAATTATCTTTTCTTGTTTAGGGCAACCTGTTATTGTGGGCTATCTTCTTGCGGGGTCAATCATCGGACCAGGAGGTCTAAAATTCATCAGTGAAATGGTGCAGGTTGAGACAGTGGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTTTAGGACTGGAGTTTTCTTTGACAAAGTTAAAAGTTGTGGGAGCTGTGGCTGTTTTTGGAGGTTTTCTACAGATCATCATATTTATGTTTTTGTGTGGTATCATTGCCATGTTAAGTGGAGCTAAACTGTCGGAGGGTGTATTTGTTGGTTCATTTCTATCAATGTCATCTACAGCAGTGGTGGTGAAGTTCTTGGTAGAACGGAATAGCAGTAATACTCTTCATGGTCAAGTTACTATTGGAACACTCATCTTACAGGATTGCGCTGTTGGTTTGTTGTTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTATTTTAGGAATGATATCTATGGGGAAGTTGCTACTGGTGTTGTCAGTATATCTCACAGCTGCATCTATTTTGTCATGGTCATTTGTTCCCCGCTTTCTTAAGCTGATGATGCAGCTGTCGTCTCAAACAAATGAGTTGTATCAGCTTGCTGCTGTGGCATTTTGCTTGCTGTCTGCTTGGTGCAGTGATAAGCTGGGCCTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGATATCTACCACTGACTTCGGTCAGCATACTTTAGATCAGGTGGAGCCAATCCGCAATTTATTTGCAGCTTTGTTCCTTTCAAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGACATTTTGCTAGCATCTGTAATGCTGGTTGTGTTTGTCAAGACAGCAGTTGCTACCGTTGTTGCAAAGGCATTTGGATACAGTATTAGGACTTCTTTTCAGGTTGGGGTCATGCTTGCTCAAATTGGAGAATTTGCTTTTGTTCTCCTAAGCCGTGCTTCAAATCTTCATCTCATTGGGGGGAAAGTTTATTTACTTCTTCTTGGAACAACTGCACTTAGTCTGGTGACCACCCCTCTTCTGTTCAAATTGATACCTGCCGTGTTAAATTTAGGGGTTCTCATGCATTGGTTCCCCTCTGAAAACAACATACAAAATGAGTATAGTCGTCTCCCCTCCTCTGAAAGGTTTGTGAATATCAGAGCCGATTTCTCAGCCTTAATCGATTTTGGTTTTGGAGATTCTTTACTAGGGCGGTCTTTTGATTTTGAGACAAGGCAACCTCATGGTCATCTGCCAAATCCATACCGCAAATTGAAAGCTCCACCACTCCCTCCACCTCCCCCCTCCGACGCCGGTCGTTCACATGCATCTCCGGTGAACCAGAAACCACCTGGAGCTCGAACTCAGATTCGTAATTCCCGATATCGAACCTGA 1971 42.97 MGFRFLMARRGGAIGSWLCIVVVLISTQIHVSARSDKEIRERFYGNLINSTAPTSGDGSIAQMFDKVLEKEFSDNDLPEGSGGSSFNSSVADQEAELETVAKITHEKGKKNDSQKANGTRAFQFQDVFSLENEESDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFMFLCGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLILGMISMGKLLLVLSVYLTAASILSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVFVKTAVATVVAKAFGYSIRTSFQVGVMLAQIGEFAFVLLSRASNLHLIGGKVYLLLLGTTALSLVTTPLLFKLIPAVLNLGVLMHWFPSENNIQNEYSRLPSSERFVNIRADFSALIDFGFGDSLLGRSFDFETRQPHGHLPNPYRKLKAPPLPPPPPSDAGRSHASPVNQKPPGARTQIRNSRYRT 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7761194 7771644 - ClG42_05g0089100.10 Clacu05g0891 248638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0891 656 Pfam Sodium/hydrogen exchanger family 175 541 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Clacu05g0891 656 MobiDBLite consensus disorder prediction 616 631 - -
Clacu05g0891 656 MobiDBLite consensus disorder prediction 609 656 - -
Clacu05g0891 656 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 18 567 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
Clacu05g0891 656 Gene3D - 165 548 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1608 Clacu-Chr3:29723371 Clacu05g0891 Clacu-Chr5:7761194 5.70E-185 dispersed
Clacu05g0891 Clacu-Chr5:7761194 Clacu08g1856 Clacu-Chr8:27852957 2.90E-185 dispersed
Clacu05g0888 Clacu-Chr5:7752175 Clacu05g0891 Clacu-Chr5:7761194 3.40E-06 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0891 K26735 - csv:101207607 1014.6