Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0899 ATGACGGAGGTTTACACTAGAATGCCAAGCGAAGATGATGAAGATTCGCCGGCCAAATGTCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACAGTATCGTCGGGGAATCCCTCGCCCTCCACCACTCCTCACCACCGGAAAGAGAATCAAACTGGTACCTCCGGTTTTGAGAAGAAGCGTGGTCGGAAGACGGACGGCGACGGTAATCCGGAGATTTCATCGTCTTCGTCATCGGGGGAGGAAGTGAAGACTGTAAGAGCTTCACCATCTGTACCTCAGCCGGTTTTCGGGATGATGTCGGTGTCCGGGAGGTCACGTGAGATGGAGGATGCAGTATCGGTGAGCACGTGCGTTTTAGGTTCAGAAAATTTCCGACGGCAACTCGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTTTGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTGATGTGCACGCGCGAGGAAGGTGAGAGTGGCGGCGGTGGAAGCAGCGCGGGAGAGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCAGCGGAGCTTTGAAAGAATGGACGAAATGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGGGTGCCATCCGATGGAGGTGGCTCTCGGCGGCTCCACCGCTGTCGTCGCCGTGCTCACGCCGGATCACATAATCGTCGCCAACTGCGGCGATTCACGCGCTGTCCTTTGCCGAGGAGGAAGGGCCATTCCGCTTTCTAATGATCACAAGCCTGATAGAAATGATGAACTAGCAAGGATTGAAGCAGCTGGAGGACGGGTGATTTTTGTAAATGGAGCTCGGGTTGAAGGAATCCTTGCAATGTCCCGGGCAATAGGAGACAAGTATCTCAAGTCAGTTGTAATATCAGAGCCTGAAATTACATTTACTAAAAGAGAATCAGATGATGAATGTTTAATACTTGCAAGTGATGGTCTGTGGGATGTTCTTTCAAGTGAATTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGAAGGAGCAGCGGCTGCTGCTACTACAATAGACCTCAATGCCACACCTCAAATTGAAGAAGAAGGGGCTGGAACTTCATATCCCTCTCGGAGTGCATTGGCTGCTGCATTGCTTACTCGTCTTGCTTTAGGGCGGAAAAGCACGGACAACATCAGTGTCATAGTTATTGATCTGAAGAGGAGCTGA 1251 52.44 MTEVYTRMPSEDDEDSPAKCRERRRRRIEMRRLATVSSGNPSPSTTPHHRKENQTGTSGFEKKRGRKTDGDGNPEISSSSSSGEEVKTVRASPSVPQPVFGMMSVSGRSREMEDAVSVSTCVLGSENFRRQLVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVMCTREEGESGGGGSSAGEEEEATWRRVMQRSFERMDEMALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEITFTKRESDDECLILASDGLWDVLSSELACEVARECLQEGAAAAATTIDLNATPQIEEEGAGTSYPSRSALAAALLTRLALGRKSTDNISVIVIDLKRS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7872997 7879123 + ClG42_05g0089900.10 Clacu05g0899 248646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0899 416 MobiDBLite consensus disorder prediction 1 95 - -
Clacu05g0899 416 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169(InterPro)
Clacu05g0899 416 SUPERFAMILY PP2C-like 93 414 IPR036457 -
Clacu05g0899 416 ProSiteProfiles PPM-type phosphatase domain profile. 99 413 IPR001932 -
Clacu05g0899 416 PANTHER PROTEIN PHOSPHATASE 61 412 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu05g0899 416 FunFam Protein phosphatase 2C 50 121 416 - -
Clacu05g0899 416 CDD PP2Cc 99 413 IPR001932 -
Clacu05g0899 416 MobiDBLite consensus disorder prediction 54 71 - -
Clacu05g0899 416 MobiDBLite consensus disorder prediction 35 53 - -
Clacu05g0899 416 MobiDBLite consensus disorder prediction 72 88 - -
Clacu05g0899 416 Gene3D - 92 416 IPR036457 -
Clacu05g0899 416 MobiDBLite consensus disorder prediction 1 23 - -
Clacu05g0899 416 Pfam Protein phosphatase 2C 100 365 IPR001932 -
Clacu05g0899 416 SMART PP2C_4 89 411 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0899 Clacu-Chr5:7872997 Clacu05g1042 Clacu-Chr5:9251315 1.60E-64 dispersed
Clacu05g0899 Clacu-Chr5:7872997 Clacu03g0119 Clacu-Chr3:1341008 9.60E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0899 K14497 - csv:101206634 697.967