Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0903 ATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCCTGTGAACTCTCTGTGCTCTGTGATGTTGATGTTGCTCTCATCATTTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGGCTGAGATAATGCTCCAAAAATTAGCAGACTTACGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAGGGCAGGGCCATGATGGAAGCTGGGAATAATGACTTAATCCCAGATTGGCTACTTTGA 696 42.82 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMMEAGNNDLIPDWLL 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7927172 7935670 - ClG42_05g0090300.10 Clacu05g0903 248650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0903 231 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Clacu05g0903 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 Coils Coil 119 139 - -
Clacu05g0903 231 MobiDBLite consensus disorder prediction 167 190 - -
Clacu05g0903 231 Coils Coil 151 171 - -
Clacu05g0903 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 MobiDBLite consensus disorder prediction 167 231 - -
Clacu05g0903 231 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu05g0903 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu05g0903 231 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu05g0903 231 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0903 231 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0903 Clacu-Chr5:7927172 Clacu07g1610 Clacu-Chr7:30661794 1.60E-42 dispersed
Clacu05g0903 Clacu-Chr5:7927172 Clacu05g0909 Clacu-Chr5:8046292 1.10E-30 proximal
Clacu05g0903 Clacu-Chr5:7927172 Clacu06g0022 Clacu-Chr6:460263 3.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47655 PF01486 K-box 9.00E-24 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0903 K09264 - csv:101212022 372.859