Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0909 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTATTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTCGCAAGCTCTGAGATGCCAAGGATTGTAGAGCGCTATCGCAAATGTTCAAGAGATGGGAAAAACAGTACCAGATTTGACAGACAACTCCAATTGCAGCAATTAAGACTTGAAGCTGAAAGCATTAATAAGAAGATGGAGCTGCTGCAACTTTCTCAAAGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCATGATGAACTTCAAGTACTTGATGCTCAGCTTCAGCGAAGCCTCTTTCAAATTAGGGCCAGAAAGGCTCAGCTGTACAAGGAGCAGATACAACAACTACAAGAAAAGGAAAGACTCCTTTCAGAAGAAAACAGGAAATTGTCTTTAAAGGCCGCAGCTGACGATTGGGCCGCCACGCACGGCTGCCGGAGGAGCTCAAGTTCGGTAGTCGACACCCAATTGGCAATTTGA 594 43.77 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCSRDGKNSTRFDRQLQLQQLRLEAESINKKMELLQLSQRKLLGYGLDSCSHDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKERLLSEENRKLSLKAAADDWAATHGCRRSSSSVVDTQLAI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8046292 8054670 - ClG42_05g0090900.10 Clacu05g0909 248656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0909 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu05g0909 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Clacu05g0909 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu05g0909 197 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 Coils Coil 88 108 - -
Clacu05g0909 197 Coils Coil 144 171 - -
Clacu05g0909 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu05g0909 197 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu05g0909 197 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0909 Clacu-Chr5:8046292 Clacu06g0023 Clacu-Chr6:466375 2.30E-45 dispersed
Clacu05g0903 Clacu-Chr5:7927172 Clacu05g0909 Clacu-Chr5:8046292 1.10E-30 proximal
Clacu01g0543 Clacu-Chr1:5438381 Clacu05g0909 Clacu-Chr5:8046292 7.80E-52 transposed
Clacu01g0328 Clacu-Chr1:3259190 Clacu05g0909 Clacu-Chr5:8046292 3.30E-44 wgd
Clacu05g0226 Clacu-Chr5:1987508 Clacu05g0909 Clacu-Chr5:8046292 1.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47656 PF01486 K-box 3.20E-21 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0909 - - - 0.0