Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0911 ATGGCAAAAAATGTATCACTCTTATTTCTAATGATGATGGTTTGTCTGTCGGAAGGAGTTCTTGATAGCCATTATTACTCAAAAACATGTCCTAGTGCAGAAAAAATCATCCTCCAAACCGTCTACAATGCTTCCATTAATGACCCCAAAGTCCCTGCTCGTCTTCTCAGGCTCTTCTTCCATGACTGTTTCATAAGGGGATGTGATGCATCAGTGTTGATAGACTCGACGCCAGAGAATCAGGCAGAGAAAGAAGCACCTCCAAACATCTCGCTAAGGTCGTTCTATGTAATCGACGAGGCCAAAGCCAAGCTTGAAAGTGCATGCCCACATACTGTTTCTTGTGCTGATATTGTCGCCATTGCTGCTAGAGATGTAGTAACTTTGTCTGGAGGCCCGTATTGGAGTGTACTCAAAGGAAGGAAAGATGGGAAGATTTCCAAAGCTTCAGAGACCAACTTGCCAGCTCCAACTTTCAATGTGTCTCAACTCATCCAGAGCTTTGCAAACAGAGGATTAGAAGTTAAGGACTTGATTGCTCTATCTGGGGCTCACACACTTGGATTCTCACACTGTTCTTCCTTTCAATCTAGACTTCGCAACTTCAGCTCCATTCATGAAATTGATCCTGCTTTGGAATCTGGGTTCGCCCAAATTCTAAGAAACAAATGTCCAAAACCAAATTTGGACAAAAATGCTGGACAGTTCTTGGACCCAACTTCCTCAACCTTTGACAATGTGTATTACAAGAGACTGTTGGAAGGAAAGGGTGTGTTTGGTTCAGATCAAGCGTTGTTTGCTGATTCTAGAACTAGAGGGCTTGTTGGATTGTTTGCTCAAGATCAGAACTTGTTCTTTAAGGAGTTCGCAACTTCAATGGTGAATTTGGGTAATGTTGGGACTCTCCCAATAGTTGTTGAAGAAGACAGGTCGAAGTGTTGTGTAAACCACAACTGGGCTTCTCATCTCATGGACACCATCTATCCAAGATCTCTCGTCCCAGCATTGTGGAGAATGAAAGAACGGTTGACTCAACTTTGA 1041 43.04 MAKNVSLLFLMMMVCLSEGVLDSHYYSKTCPSAEKIILQTVYNASINDPKVPARLLRLFFHDCFIRGCDASVLIDSTPENQAEKEAPPNISLRSFYVIDEAKAKLESACPHTVSCADIVAIAARDVVTLSGGPYWSVLKGRKDGKISKASETNLPAPTFNVSQLIQSFANRGLEVKDLIALSGAHTLGFSHCSSFQSRLRNFSSIHEIDPALESGFAQILRNKCPKPNLDKNAGQFLDPTSSTFDNVYYKRLLEGKGVFGSDQALFADSRTRGLVGLFAQDQNLFFKEFATSMVNLGNVGTLPIVVEEDRSKCCVNHNWASHLMDTIYPRSLVPALWRMKERLTQL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8078153 8080264 - ClG42_05g0091100.10 Clacu05g0911 248658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0911 346 Gene3D - 24 315 - -
Clacu05g0911 346 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 ProSiteProfiles Plant heme peroxidase family profile. 20 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 SUPERFAMILY Heme-dependent peroxidases 21 315 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 Gene3D Peroxidase, domain 2 155 296 - -
Clacu05g0911 346 FunFam Peroxidase 155 296 - -
Clacu05g0911 346 CDD secretory_peroxidase 21 315 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu05g0911 346 PANTHER PEROXIDASE 25-RELATED 14 302 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu05g0911 346 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Clacu05g0911 346 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 Pfam Peroxidase 40 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g0911 346 FunFam Peroxidase 24 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2119 Clacu-Chr1:32859019 Clacu05g0911 Clacu-Chr5:8078153 7.60E-91 dispersed
Clacu04g0304 Clacu-Chr4:10905646 Clacu05g0911 Clacu-Chr5:8078153 5.10E-71 dispersed
Clacu05g0911 Clacu-Chr5:8078153 Clacu11g0921 Clacu-Chr11:8872742 9.80E-68 dispersed
Clacu05g0911 Clacu-Chr5:8078153 Clacu08g1576 Clacu-Chr8:25585299 1.40E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0911 K00430 - csv:101210306 558.91