Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0920 ATGTCTGATAATAATAATAATTCTCCCGGCCGCCCTGGTCGCCACCACCTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACATACCCCACTCCCGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCATGCCTCCCTTAATTTCCCCGACTCTCGTAATTCCTATCGCATTCCTCTTTCCACTTCCGCTTCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCTGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGGCGGTGGGCCCTCCTCCCATGCCACGGCGGATTCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 579 55.61 MSDNNNNSPGRPGRHHLFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPHASLNFPDSRNSYRIPLSTSASDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDGGGPSSHATADSSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8147043 8147621 - ClG42_05g0092000.10 Clacu05g0920 248667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0920 192 MobiDBLite consensus disorder prediction 103 145 - -
Clacu05g0920 192 MobiDBLite consensus disorder prediction 158 192 - -
Clacu05g0920 192 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0920 192 SMART rav1_2 17 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0920 192 CDD AP2 18 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0920 192 MobiDBLite consensus disorder prediction 103 137 - -
Clacu05g0920 192 MobiDBLite consensus disorder prediction 169 192 - -
Clacu05g0920 192 Pfam AP2 domain 19 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0920 192 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0920 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 190 IPR045277 GO:0003700(InterPro)
Clacu05g0920 192 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Clacu05g0920 192 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677(InterPro)
Clacu05g0920 192 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0920 192 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0313 Clacu-Chr1:3086118 Clacu05g0920 Clacu-Chr5:8147043 2.30E-39 dispersed
Clacu05g0920 Clacu-Chr5:8147043 Clacu10g0365 Clacu-Chr10:4637407 2.50E-41 dispersed
Clacu05g0919 Clacu-Chr5:8126989 Clacu05g0920 Clacu-Chr5:8147043 6.20E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47659 PF00847 AP2 3.00E-10 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0920 - - - 0.0