Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0928 ATGGCATCTTCTCGCCTGACTGGAGGATTAGCTCAGTCTCCATCAAGTTCTGGGATTTTCTACCAAGGAGAAGGGCAGTCCCCAGCTATTGTTAATTCTCATTTGAGCCAATCATTTGCAAATTCATCAAATTCAATTCCAGGAACTGGATGTTCTGATTTTGGTCCAGTGTCCGGAGACATGAACAATGCAGTTTTAAATAGTGTGGCAAATTCAGGACCCAGTGTGGGTGCAAGTTCATTAGTTACGGATGCAAACTCTGCACTTTCAGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCGTACATGCGTTTGCCTGCATCGCCTATGTCATTCAATTCAAATAACATTAGTGTTTCGGGGTCCTCAGTTATAGATGGATCCTGTGTTGTGCAGCAAAATTCTCAACAGGACCAAAATATCCAACACATACAGCAACAGACGCAGCCAGGTGCTTCACATGCCACATCATTACCAACATCACAAATAGGCCAAGTATCACTTCCGTTGGGCGGTAAACATCAGGGATCTTTCATTCCAGATCCAAACAGTTATTCTCAGGTGCAGAAGAAACCACGACTGGATATAAAGCCGGAAGATGTGCTGCAACAGCAAGTCTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCAGTCACAAAACCGTAACTCACAGTTACAAGCTTTATTTCAACAGCAAAGAATGCGGCAACAGCAGCAGATTTTGCAGTCTCTACCTCAGTACAGGGCTCAGCTTCAGCAACAGCAGCAGCAGATACAGTTGAGGCAGCAATTGCAACAGCAGGTAATGCAGCCTGTATCACCCATGAAGCGGCCCCCATATGATGCTGGTGGTGTTTGTGCTCGCCGGCTGATGCAATATTTATATCATCAGCGGCAAAGACCTCCTGAAAATAGTATAGCCTACTGGCGAAAGTTTGTAGCAGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTGTATGAGAATGTTGGCCACCATGCTCTTGGTGTGTTTCCTCAGGCAGCTATGGATGCGTGGCAGTGTGACATTTGTGGTTCCAAATCAGGGAGGGGATTTGAGGCTACGTTTGAAGTATTACCAAGACTCAGCGAGATCAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTGGACCTTCCCCAAGAAAGAAGATTTTCTACTGGACTTATGATGTTAGAGTATGGAAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGCGAGGGTCAGCTTCGTATCATATTCACTCAAGATTTGAAGATTTTGTGTTGGGAATTTTGTGCTCGGCGTCATGAAGAACTTCTTCCTCGTAGGTTGGTTGCGCCTCAGGTGAATCAGCTGGTACAGGTTGCCCAGAAATGCCAAAACACAATTGCTGAAAGTGGGCCGGATGGTGTTTCTCAGAAAGATTTGCAGACAAATAGCAATATGGTACTGACAGCTGGTCGTCAGCTTGCTAAGAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTCAGGTGTTTGCAGATATCAGAGGTTGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGGGATCAAAAAGTTGGGCCTATCGAGGGCTTGAAGAATTATCCTAGACATGCCACTGCAGCCAAGCTCCAAATGCAAAAAATGCAGGAGATGGAACAGTTAGCGAGTATTCAAGGTCTTCCCACCGACCGCAACACAATTAATAAGCTGATGACATTGCATCCTGAACTTGATAACCATGGGATTAATAACCATCAGATGATTGGTCGAGGAGGTTTCAGTGGTTCAGCACAAGCTGCTTTGGCAATGACTACATACCAGAATATCCTCATGAGACAGAACTCTATGAATTCCAACCCCAGCCCACATCAACAGGAGGCCTCATCTTCTTTCAATAATCCCAACTATAATCCATCCCCTACACTCCAGGGGACTGTATCCCTGATGCCTGGATCCGTACAGAACTCCTCTGTTGGTGGCTTTTCAGGCGCTCAGCAAGCCTTGCAAAAGCAATCGCAGCAGCTGCAACATCATCCACCAAATCCTGGCTCCTTGGTCCAGCAAAATCATCATCAGACGATTCAAGGTGGCCAGGCCCTACAACAACAGATGATCCAGCAACTACTGCAGATGTCAAGTAACAATAAGAGTGCCGGTTTACAACAGCAACCCCTTACTGGACCAAATGCAAATAGAAGTTTAGGAAGAAGGGGCATGGGTTTTGTGGGCAACACCTCAGTTGCAGCTGTGGCATCTGGAAATATGTCTGGTAGCAACGTCCCTGGTCCGAGTAGGAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAGTCCTCTGCTGGTAACAGTGAATTCAATCAGAAGGGTTCAGATTTCCCGCAAGATCTTCATCTGCCAGAGAATCTGGTTGAAGATATAGGCCAAGATTTCCCTGAAAACGGGTTTATTAACAATGACCTTGATGAGGATTTGGGTTATGTCTGGAAGGCTTGA 2556 45.38 MASSRLTGGLAQSPSSSGIFYQGEGQSPAIVNSHLSQSFANSSNSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNIQHIQQQTQPGASHATSLPTSQIGQVSLPLGGKHQGSFIPDPNSYSQVQKKPRLDIKPEDVLQQQVLQQLFQRQDSMQSQNRNSQLQALFQQQRMRQQQQILQSLPQYRAQLQQQQQQIQLRQQLQQQVMQPVSPMKRPPYDAGGVCARRLMQYLYHQRQRPPENSIAYWRKFVAEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPQERRFSTGLMMLEYGKAIQESVYEQLRVVREGQLRIIFTQDLKILCWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQNTIAESGPDGVSQKDLQTNSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLASIQGLPTDRNTINKLMTLHPELDNHGINNHQMIGRGGFSGSAQAALAMTTYQNILMRQNSMNSNPSPHQQEASSSFNNPNYNPSPTLQGTVSLMPGSVQNSSVGGFSGAQQALQKQSQQLQHHPPNPGSLVQQNHHQTIQGGQALQQQMIQQLLQMSSNNKSAGLQQQPLTGPNANRSLGRRGMGFVGNTSVAAVASGNMSGSNVPGPSRSNSFKAASNSESSAGNSEFNQKGSDFPQDLHLPENLVEDIGQDFPENGFINNDLDEDLGYVWKA 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8227089 8232289 + ClG42_05g0092800.10 Clacu05g0928 248675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0928 851 MobiDBLite consensus disorder prediction 636 721 - -
Clacu05g0928 851 PANTHER LIM DOMAIN-BINDING PROTEIN 17 840 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Clacu05g0928 851 MobiDBLite consensus disorder prediction 1 22 - -
Clacu05g0928 851 MobiDBLite consensus disorder prediction 140 172 - -
Clacu05g0928 851 MobiDBLite consensus disorder prediction 737 752 - -
Clacu05g0928 851 MobiDBLite consensus disorder prediction 140 194 - -
Clacu05g0928 851 MobiDBLite consensus disorder prediction 737 759 - -
Clacu05g0928 851 MobiDBLite consensus disorder prediction 776 811 - -
Clacu05g0928 851 Pfam LIM-domain binding protein 294 554 IPR029005 -
Clacu05g0928 851 MobiDBLite consensus disorder prediction 776 817 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0568 Clacu-Chr1:5719122 Clacu05g0928 Clacu-Chr5:8227089 5.40E-265 dispersed
Clacu05g0928 Clacu-Chr5:8227089 Clacu08g0436 Clacu-Chr8:6116894 1.50E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0928 - - - 0.0