Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0936 ATGCCTAGTGGTGCAATTACTGACCAGAGCTTTCTAGCTTATTCGATTCCCAGTTCAATGCCCAGCTCCTCTGAATTCTCCAGTTCCTTAAGGAAAATGGACGGTTATGGAGAAGTGTGTCTGCTTGGAGACGGCTTTGATCCGACTGGAATTGTGAGGATAAGGGAAGATGGATATGATAGTAGATCAGGCAGTGACAACATCGATGGCGCTGTATCTGGGGATGATCAAGATGCTAATGAAGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTTAAGGAGTGTCCTCATCCTGATGATAAACAAAGAAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACGCAAATAGAACGACATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGAGCCGAGAATAGTGTGATGAAGGATGCTATTTCTGACCCAACGTGTAATACTTGTGGTGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGATGAACTGCACCGGTTATATGCAGTCACCAACAAGTTCTTGGGCTGGCCGGTTGTGCCCTTTGCCAATCATGGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTTTCAGTAGGAAGAAATGGAATTGGAAATTTGAGTACCGTTTCTGATTCAATGGGGCTTAATTTGGGAAACGAACTTTTCAATGCTGGCCCTGTGATGCCTGTTAGTAAGCCTGAAATAGGCATGCTAAGTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCCATGAATGAATTGGTTAAGATGGCTCAAATGGACGGTCCCCTTTGGATCAGAAGTCGGGATGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGACATTTCCTTCTTCGGCTGGCATGAAGCACAGTAATTGGACAACAGAGGCGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTCGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTCGAGCTACTACAATTGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTCCGAGTACTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCACGCTAATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCATTTTTTGGTTGCAGGAGGCTCCCTTCAGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATCCACCAGCTTTACCGGCAGTTAATTAGTTCGGGCAGCGGCTTTGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCCCTCCGAAGATCCTGCAGGAATATCTCCATGCGGTAGGAGAAGTATGTTGAAGCTATCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGCAGTTCAACTTTGCATAAGTGGGACAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAAAGCATCAACGATCCTGGCGAGCCACCTGGTATCGTGTTGAGTGCGGCAACTTCGGTTTGGATGCCAGTAACTCAGCAGAGGTTGTTTGCATTCTTGCAAGATGAGTGCTTACGGAGTGAGTGGGATATTTTATCCAACAGCCGGCCAATGCTAGAGATGCTCCGCATCTCAAAAGGCCAAGGACCGGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAACGCTAATGAGAGCACAATGTTCATATTGCAAGAGACTTGGACTGATGTATCAGGCTCGCTGGTTGTTTACGCTCCAGTTGACACTTCATCGGTTAATTTGGTGATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCAATGGTCCATCCAACTATGCTTGCACAAACGACCAAGACGGATCTGTCAAGTCAGTCGTTAACAGTGGCCATGGTGGTGGATGTCTGCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACCGCCAAACTCACCGTCGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACTGCCCTTCAAATATCGTAA 2346 44.93 MPSGAITDQSFLAYSIPSSMPSSSEFSSSLRKMDGYGEVCLLGDGFDPTGIVRIREDGYDSRSGSDNIDGAVSGDDQDANEEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISDPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYAVTNKFLGWPVVPFANHGSSPSSDSCLELSVGRNGIGNLSTVSDSMGLNLGNELFNAGPVMPVSKPEIGMLSNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRSRDGKETLNLDEYSRTFPSSAGMKHSNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHANGLWAVVDVSIGEGSNSNSFFGCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPSEDPAGISPCGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPMLEMLRISKGQGPDNRVSLLRANPMNANESTMFILQETWTDVSGSLVVYAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPNGPSNYACTNDQDGSVKSVVNSGHGGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQIS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8281525 8286065 + ClG42_05g0093600.10 Clacu05g0936 248683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0936 781 MobiDBLite consensus disorder prediction 57 94 - -
Clacu05g0936 781 Coils Coil 138 170 - -
Clacu05g0936 781 Gene3D - 73 160 - -
Clacu05g0936 781 ProSiteProfiles START domain profile. 285 517 IPR002913 GO:0008289(InterPro)
Clacu05g0936 781 CDD START_ArGLABRA2_like 294 512 - -
Clacu05g0936 781 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Clacu05g0936 781 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
Clacu05g0936 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 779 IPR042160 -
Clacu05g0936 781 SMART HOX_1 86 148 IPR001356 GO:0003677(InterPro)
Clacu05g0936 781 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Clacu05g0936 781 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu05g0936 781 CDD homeodomain 87 144 IPR001356 GO:0003677(InterPro)
Clacu05g0936 781 SUPERFAMILY Bet v1-like 542 775 - -
Clacu05g0936 781 FunFam Homeobox-leucine zipper protein GLABRA 2 294 513 - -
Clacu05g0936 781 Pfam Homeodomain 87 142 IPR001356 GO:0003677(InterPro)
Clacu05g0936 781 SMART START_1 294 514 IPR002913 GO:0008289(InterPro)
Clacu05g0936 781 Pfam START domain 295 513 IPR002913 GO:0008289(InterPro)
Clacu05g0936 781 SUPERFAMILY Bet v1-like 286 514 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0936 Clacu-Chr5:8281525 Clacu09g1169 Clacu-Chr9:11397695 3.50E-150 dispersed
Clacu05g0208 Clacu-Chr5:1846227 Clacu05g0936 Clacu-Chr5:8281525 1.30E-213 wgd
Clacu05g0936 Clacu-Chr5:8281525 Clacu06g0005 Clacu-Chr6:307312 3.90E-266 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47662 PF01852 START 6.80E-48 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0936 K09338 - csv:101218216 1468.37