Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0938 ATGGTTTTTCATATGGGTATGGAGTTGAAACGCTTCTTTTTCATTTTCATTGTCTGCTTCGAGCTCTGCATTTTGAGCTCCAATGGCGCTACAGTCCAGAATGAGATTATTATCGAGAGAGAAAGCTTGATTTCTTTCAAAGCTTCGTTAGAGACCTCTGAAATTCTGCCATGGAACTCAACAGTTCCTCACTGCTTTTGGGCCGGAGTTTCTTGCCGATTCGGTCGAGTTACAGAGCTCTCTCTTTCATCTCTTTCACTCAAAGGCCAACTCTCACAGTCCCTTTTTAATATTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTCTTCTATGGCTCAATCCCACCTCAGGTATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGGCGGAAATCAGTTTTCCGGCGACTTCCCTATCGAACTCACTGAGTTGACTCGGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACAGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCAGTTACGGACTCTTGACCTCTCCGGCAATGCCTTCGTCGGAAATGTTCCGCCCCACATCGGAAACTTGACGAAGATTTTATCCTTGGACCTCGGCAACAATCTTTTATCAGGTTCACTTCCATTGACCATCTTTACTGAGCTTACATCTTTAACTTCTCTGGACATTTCAAACAACTCGTTTTCGGGTTCAATCCCATCTGAAATTGGTAATCTAAAGCATTTGACTGGGCTTTATATCGGCATTAACCACCTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGCCGTCTTGTTCTTTAACTGGTCCATTGCCTGACGAACTATCCAAGTTGAAATCATTGAGCAAACTGGATCTTTCATACAACCCACTTGGGTGTTCTATCCCTAAAACGATTGGTGAATTGCAGAACTTGACTATATTGAATCTGGTTTACACTGAGCTTAATGGTTCTATTCCTGCTGAGCTTGGGAGATGCAGAAATTTGAAAACATTGATGCTTTCTTTCAACTTTCTAACTGGGGAGTTGCCACAAGAGCTTTCTGAGCTTTCCATGTTGACATTTTCTGCTGAGAGGAATCAGCTTTCTGGGCCATTACCTTCCTGGCTTGGCAAATGGGATCATGTCGATTCTATTTTACTTTCGAGTAATCGGTTCACCGGCGAAATCCCACCTGAGATTGGAAATTGCTTGATGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATTCCTAAAGAAATTTGTAATGCTGTATCCTTGACAGAGATTGATCTTGACAGTAATTTCCTTTCGGGTACGATTGATGACACATTTGTAATGTGTAAAAACCTTACGCAGTTGGTCTTGGTTGACAACCAGATTGTTGGTTCCATACCAGAGTACTTCTCAGACCTTCCCCTACTGGTAATCAACCTTGACTCCAACAATTTTACAGGTTCTTTACCGACAAGTATATGGAACTCAATGGATTTGATGGAATTTTCTGCTGCAAATAACCAGTTAGAGGGTCATCTCCCTCCAGAAATTGGTTATGCAGCTTCCCTTGAGAGGCTTGTTCTCAGCAACAACAGGCTGACAGGCATAATACCAAATGAGATTGGTAATCTCACAGCCCTTTCTGTTCTAAATTTGAATTCAAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGAACTTACCACATTGGACCTTGGAAACAACAGTCTAATTGGGTCGATTCCAGAAAGACTTGCAGACCTTACTGAATTACAGTGCCTAGTTCTTTCACACAACAATTTATCTGGAGAAATACCTTCCAATCCGTCTGCTTATTTTCGACAGTTGACAATTCCTGATTTGAGCTTTGTTCAGCATCATGGTGTTTTTGATCTGTCTCATAATAGATTGTCTGGTACCATACCTGATGAACTGGGGAACTGTGTCGTTGTGGTAGATCTTTTACTCAACAATAATCTACTTTCTGGAGCAATTCCTAGATCTCTCTCAAAGTTAACAAACCTCACAACCTTGGATTTATCTGGCAATATGCTTACTGGTCCTATTCCTGCAGAGATTGGCAATGCTCTCAAGCTCCAAGGCCTGTATCTTGGGAATAATCACCTCATGGGAATGATCCCTGAAAGCTTCAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTAACTGGTAATAAATTATCTGGTTCGGTTCTGAAAACTTTTGGTGGTCTGAAAGCTCTAACTCATTTGGATTTAAGTTGTAATGAGTTGGATGGTGATCTTCCCTCTTCTCTGTCCAGCATGTTGAATCTTGTGGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTAATAACTATTTTGAGGGTGTTCTTCCACGAACATTGGGCAATCTTTCATACTTGACGACTTTGGATCTTCATGGAAATAAGTTCACAGGGCCAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAATACTTTGATGTTTCGAACAACAGGCTTTCAGGGGAGATTCCAGACAAAATATGCAGCCTCATCAATATGTTTTATCTGAATTTAGCAGAAAACAGTCTTGAAGGGCCAATTCCGAGAAGTGGCATTTGCCAGAATCTATCCAAAAGTTCACTTGCCGGTAACAAGGACCTTTGTGGGAGAATCCTGGGTTTCAATTGCCGGATCAAAAGCTTAGAAAGATCTGCAGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTTAGCGTTCTTATTGTTCTAACTGTGGCGTTTGCCATGAGAAGACGGATTATTAGAAGACAGAGAGATAATGATCCAGAGGAAATGGAGGAAAGCAAATTAAACAGTTTCATAGACCCCAATCTCTATTTCTTAAGCAGCAGCAGATCAAAAGAGCCTTTAAGCATCAATGTGGCCATGTTCGAGCAGCCCCTTCTGAAGTTAACTTTGGTTGATATCCTGGAAGCAACCAATAACTTCTGTAAAACAAACATTATTGGAGATGGAGGATTCGGGACCGTCTACAAGGCCACTTTGCCTGATGGAAAAGTTGTTGCTGTGAAGAAGCTAAGCGAAGCGAAAACACAGGGGAATAGGGAATTCATTGCTGAAATGGAAACTATAGGCAAAGTAAAGCACCATAATCTTGTTCCATTGCTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTTCTTGTGTATGAGTATATGGTGAACGGTAGCTTGGATCTTTGGCTGAGAAACCGAACTGGTACTCTCGAAGTCCTTAACTGGGAGACTCGCTTCAAAGTCGCTTCAGGCGCAGCCCGTGGACTGGCATTTCTTCACCATGGATTCATACCCCATATCATTCACAGAGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTGGCAAGATTGATCAGTGCTTGTGAGACTCATGTCACGACTGAGATTGCTGGAACCTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGCGGTCGACTACCAAAGGCGACGTTTACAGCTTCGGTGTGATTCTACTGGAATTGGTAACTGGGAAGGAACCAACTGGACCTGATTTTAAGGAGATTGAGGGTGGAAATTTGGTTGGCTGGGTGTTTCAGAAGATCAACAAGGGTCAGGCTGCAGATGTTCTGGATGCCACAGTTCTGAATGCTGATTCCAAGCATATGATGCTTCAAACTCTTCAGATTGCTTGTGTTTGCTTGTCAGAAAATCCTGCTAATAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3915 42.4 MVFHMGMELKRFFFIFIVCFELCILSSNGATVQNEIIIERESLISFKASLETSEILPWNSTVPHCFWAGVSCRFGRVTELSLSSLSLKGQLSQSLFNILSLSVLDLSNNFFYGSIPPQVSNLRSLKVLALGGNQFSGDFPIELTELTRLENLKLGTNLFTGKIPPELGNLKQLRTLDLSGNAFVGNVPPHIGNLTKILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPSEIGNLKHLTGLYIGINHLSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGELQNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNFLTGELPQELSELSMLTFSAERNQLSGPLPSWLGKWDHVDSILLSSNRFTGEIPPEIGNCLMLNHLSLSNNLLTGPIPKEICNAVSLTEIDLDSNFLSGTIDDTFVMCKNLTQLVLVDNQIVGSIPEYFSDLPLLVINLDSNNFTGSLPTSIWNSMDLMEFSAANNQLEGHLPPEIGYAASLERLVLSNNRLTGIIPNEIGNLTALSVLNLNSNLLEGTIPAMLGDCSELTTLDLGNNSLIGSIPERLADLTELQCLVLSHNNLSGEIPSNPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGAIPRSLSKLTNLTTLDLSGNMLTGPIPAEIGNALKLQGLYLGNNHLMGMIPESFSHLSSLVKLNLTGNKLSGSVLKTFGGLKALTHLDLSCNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVELFPSSMTWKIETLNLSNNYFEGVLPRTLGNLSYLTTLDLHGNKFTGPIPSDLGDLMQLEYFDVSNNRLSGEIPDKICSLINMFYLNLAENSLEGPIPRSGICQNLSKSSLAGNKDLCGRILGFNCRIKSLERSAVLNAWSVAGIIIVSVLIVLTVAFAMRRRIIRRQRDNDPEEMEESKLNSFIDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKVVAVKKLSEAKTQGNREFIAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDE 1304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8315376 8319290 + ClG42_05g0093800.10 Clacu05g0938 248685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0938 1304 SMART serkin_6 1026 1298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0938 1304 Gene3D Ribonuclease Inhibitor 566 627 IPR032675 -
Clacu05g0938 1304 Gene3D Ribonuclease Inhibitor 38 144 IPR032675 -
Clacu05g0938 1304 SMART LRR_sd22_2 458 484 - -
Clacu05g0938 1304 SMART LRR_sd22_2 855 881 - -
Clacu05g0938 1304 SMART LRR_sd22_2 170 196 - -
Clacu05g0938 1304 SMART LRR_sd22_2 685 717 - -
Clacu05g0938 1304 SMART LRR_sd22_2 577 603 - -
Clacu05g0938 1304 SMART LRR_sd22_2 757 786 - -
Clacu05g0938 1304 SMART LRR_sd22_2 291 317 - -
Clacu05g0938 1304 SMART LRR_sd22_2 219 245 - -
Clacu05g0938 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1148 1160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0938 1304 PRINTS Leucine-rich repeat signature 685 698 - -
Clacu05g0938 1304 PRINTS Leucine-rich repeat signature 222 235 - -
Clacu05g0938 1304 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 809 1295 IPR052592 -
Clacu05g0938 1304 FunFam serine/threonine-protein kinase BRI1-like 2 988 1101 - -
Clacu05g0938 1304 Pfam Protein tyrosine and serine/threonine kinase 1030 1297 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0938 1304 SUPERFAMILY Protein kinase-like (PK-like) 1007 1298 IPR011009 -
Clacu05g0938 1304 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 633 929 - -
Clacu05g0938 1304 ProSitePatterns Protein kinases ATP-binding region signature. 1032 1055 IPR017441 GO:0005524(InterPro)
Clacu05g0938 1304 FunFam Leucine-rich repeat receptor-like protein kinase 38 189 - -
Clacu05g0938 1304 Gene3D Ribonuclease Inhibitor 216 450 IPR032675 -
Clacu05g0938 1304 Gene3D Ribonuclease Inhibitor 628 928 IPR032675 -
Clacu05g0938 1304 FunFam Uncharacterized protein 367 631 - -
Clacu05g0938 1304 Gene3D Ribonuclease Inhibitor 451 549 IPR032675 -
Clacu05g0938 1304 Pfam Leucine rich repeat 810 868 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine rich repeat 556 614 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Gene3D Phosphorylase Kinase; domain 1 989 1101 - -
Clacu05g0938 1304 FunFam leucine-rich repeat receptor protein kinase EMS1 217 366 - -
Clacu05g0938 1304 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Clacu05g0938 1304 Gene3D Ribonuclease Inhibitor 145 215 IPR032675 -
Clacu05g0938 1304 ProSiteProfiles Protein kinase domain profile. 1026 1304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0938 1304 SUPERFAMILY L domain-like 628 918 - -
Clacu05g0938 1304 Pfam Leucine Rich Repeat 760 781 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 687 708 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 413 433 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 643 661 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 172 194 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 391 410 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 711 733 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 Pfam Leucine Rich Repeat 735 757 IPR001611 GO:0005515(InterPro)
Clacu05g0938 1304 SMART LRR_typ_2 711 732 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 194 218 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 219 243 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 170 193 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 291 315 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 685 709 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 831 855 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 530 552 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 98 122 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 757 781 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 733 756 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 553 577 IPR003591 -
Clacu05g0938 1304 SMART LRR_typ_2 601 624 IPR003591 -
Clacu05g0938 1304 Gene3D Transferase(Phosphotransferase) domain 1 1102 1304 - -
Clacu05g0938 1304 FunFam serine/threonine-protein kinase BRI1-like 2 1102 1304 - -
Clacu05g0938 1304 CDD STKc_IRAK 1032 1301 - -
Clacu05g0938 1304 SUPERFAMILY L domain-like 389 620 - -
Clacu05g0938 1304 SUPERFAMILY L domain-like 57 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0684 Clacu-Chr1:7481575 Clacu05g0938 Clacu-Chr5:8315376 2.10E-90 dispersed
Clacu04g0110 Clacu-Chr4:2553727 Clacu05g0938 Clacu-Chr5:8315376 6.30E-20 dispersed
Clacu05g0938 Clacu-Chr5:8315376 Clacu11g0235 Clacu-Chr11:2115426 2.60E-81 dispersed
Clacu06g1857 Clacu-Chr6:29050507 Clacu05g0938 Clacu-Chr5:8315376 1.00E-54 dispersed
Clacu11g0769 Clacu-Chr11:7534720 Clacu05g0938 Clacu-Chr5:8315376 1.50E-42 dispersed
Clacu11g1675 Clacu-Chr11:27998616 Clacu05g0938 Clacu-Chr5:8315376 1.70E-61 dispersed
Clacu05g0938 Clacu-Chr5:8315376 Clacu01g1655 Clacu-Chr1:28653318 1.30E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73559 PF07714 PK_Tyr_Ser-Thr 9.40E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0938 - - - 0.0