Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0939 ATGTATCTGCAAATTCTTTCAACATACAGGAATTTGCTTCTTCATGTTGGTCTCTCTCTCTCGCTTTCTGTTTTCATCATCTTCTTCAAAATCCCAACCCTTTTCCTTCATGGCATATTCACCTACATCCACCCTGATAACACCAACAGCGGCGTCCGAGCCGCGATTAGAAGACCTGACGGCTCTAACTCCGGTTCTGGACTAGAGGGGTACCGAAACTTGTCCTCAACTGGTGCCGCTGAGATCAGGAAAAGAACAAAGTCGAAGGACAAGGTTGAGTTTGACGAAAGCAAGGCGCAGATCTTCAGGTTAAAGCTGGATGAAAATCATCTGCAAACGCGGATCTATTTCAAAGAATACAGAGATGGTTTCACTTTTTCATTTGTGGGTATTTCTTGTTTACTGCTGCAAATTTTCTTGGGTGCATCAAAAAATTCTGGGGTTTGGGGAAATGGGATTTTTGTTCCTCTTCTGTTTGCGATCTTTGCTGGATGCAAGCTGTTTGTATCTCTCACAAAGGTTGCTTTGGAGAAATCTGCGTCCAGGACGTTGGATAGGCAATTGAGTTTGCTCTTTGGAGTTTCTGGGTTTCTTTTTGGGCTTTTAACTTGTTCTGCTTTTAGCCCTCTTATATTGGATTTTGATCTTGGTGAAATTGGTGGTTCGGGGGCTTGTTTCGTTTCTATCTTAATGGCCTGTTGTGCTGGGTTTTTGTTTATACCTGCAACCAAAATCGCTCGATCATTTTGGCTTGGAACTGATCAAATTAGATGCAATTTGGATATGGTTTATTGTGGATGGTTTTCTCGGATGGTTTTGTATTCAAGTCAGGTAGTCATGGCTTTCACCACCTTGCTTTGGGTTAACCCATTAGCTGAAATTTTCATTAACAAGAACATCGGCGAAGGTACAATTGACCGTATGTCTAGTGAAATCCGAAATGCTGACAGATTGGTCGGAAGTATAGGATTCTCAAAGGCAGATTTCATCAAGCTTAGGCTCTGGTGTTTGTCACTGTCGGGTTTCTTGCAAATCATCGCAGTAAGGCAAAACTTGCAAATGTATCTGAACGAAGCTTTGTTATCTTGGTATCAAAGATTGCATGCTGGGAAAGTTCCTGACTTGGATTTCAGTAGAGCAAAGGTTTTTCTGCACAATCACTACTTATGTGTGTCTGCTTTGCAGTTCTTTGCTCCACCAGCCTTAGTTTTTCTTTTTGTTGGGTTATCGCAAATTGGTATTAACTCTTTGGAAAATACCAATTTGATGGCTTTTGTTGTTATGGTACCTTATTTGCATTATGACTTCTCGGTGGCGTCTTCTTCAATCTTTGCCAGTTCAGGGGAGAGAGAAAAGTCTCAGTCATGCAGAGCAGCTTTGTGGCCAAAGATTCCAGGAGAAGGGCATATTTTGTGGGTCAATGCAGTAAAGGCTTTCGACTTGGTGAATATGAATGGAGAGAATTTGAGGAATCATCTTCCCTTCCCATCACTTGGAAGCAAAAAAATCTTGTCTTCCTCCTTCTTCCACGAACCTTCTAGAATTGAAATTCCAGTGCCGTACCTGGAAAATTCTCCCAACTATTCCTCTAAAATTCTCATACCGAAGCTTTCCTTAGGGTTTGGGAGTTGCGACCGATCATTCGGGGATCTGATTTCGTTGATTCTTGGGGTTCCTCTCATGGAGGACCCGACCGCCAAGCAGAAGCCTACTGCAGGCGATTCACAGAGATCTGTGCCCACTCCTTTCTTGACGAAAACTTATCAGCTCGTTGACGACGAGACAATTGACCATGTCATTTCATGGAACGACGACGGATCTACCTTCATCGTCTGGAACACCATGGCTTTCGCCAGGGATTTGCTCCCCAAGTATTTCAAGCACAATAACTTCACCAGCTTTCTCCGTCAGCTCAATACTTATGGATTTAGAAAGGTTGTATCGGATCGTTGGGAGTTTGCGAACGAGTGCTTTCGTAAGGGCAAGAAACAGCTTCTTTGTGAGATTCAGCGTCGGAAATTGGCCGCTCCGGTGCCGTCCACTGCGACGATTCCGTCTGCGCAACTATTAACATTGACGGGGAATTCTTCCGGTGAAGAACAAGTGATTTCGTCCGATGAGACTCCGACGACAGCTCTTGCAGAGCTGATCGATGAGAACGATCGGCTGAGAAAAGAGAAAGTTCAGCTTACGGAACAATTGGTTGAGGTGAAATCTCTGTGCAACAATATCTTCTCGTTGATGTCGAGCTTCGTTGAAAGTCAGTTTAAGAGCAGTTTTAAAGTGAGAGAGAGCGTTTTAACATCCGCAAAATCGCTCGATCTTTTCCCGGTGAAGCGGGCTTCCGGTGAAGACGAAACGGCGGAGGCCGAGGAGGAGGAGACGAATCAGATCGGCGCGAAGCGACCGAGGGAATATAGGGAAGTGGCGACGGAGACGGCGGAGGATGATACTGCTTTGCGGCTTCAACCACCGGATAGATCGGAAGTCTTATCAGAGCGGATAAATTGTCAAAAAAAAGTTGATCAGAAAACGTGGCATAATCAGGTCCACTGA 2556 44.52 MYLQILSTYRNLLLHVGLSLSLSVFIIFFKIPTLFLHGIFTYIHPDNTNSGVRAAIRRPDGSNSGSGLEGYRNLSSTGAAEIRKRTKSKDKVEFDESKAQIFRLKLDENHLQTRIYFKEYRDGFTFSFVGISCLLLQIFLGASKNSGVWGNGIFVPLLFAIFAGCKLFVSLTKVALEKSASRTLDRQLSLLFGVSGFLFGLLTCSAFSPLILDFDLGEIGGSGACFVSILMACCAGFLFIPATKIARSFWLGTDQIRCNLDMVYCGWFSRMVLYSSQVVMAFTTLLWVNPLAEIFINKNIGEGTIDRMSSEIRNADRLVGSIGFSKADFIKLRLWCLSLSGFLQIIAVRQNLQMYLNEALLSWYQRLHAGKVPDLDFSRAKVFLHNHYLCVSALQFFAPPALVFLFVGLSQIGINSLENTNLMAFVVMVPYLHYDFSVASSSIFASSGEREKSQSCRAALWPKIPGEGHILWVNAVKAFDLVNMNGENLRNHLPFPSLGSKKILSSSFFHEPSRIEIPVPYLENSPNYSSKILIPKLSLGFGSCDRSFGDLISLILGVPLMEDPTAKQKPTAGDSQRSVPTPFLTKTYQLVDDETIDHVISWNDDGSTFIVWNTMAFARDLLPKYFKHNNFTSFLRQLNTYGFRKVVSDRWEFANECFRKGKKQLLCEIQRRKLAAPVPSTATIPSAQLLTLTGNSSGEEQVISSDETPTTALAELIDENDRLRKEKVQLTEQLVEVKSLCNNIFSLMSSFVESQFKSSFKVRESVLTSAKSLDLFPVKRASGEDETAEAEEEETNQIGAKRPREYREVATETAEDDTALRLQPPDRSEVLSERINCQKKVDQKTWHNQVH 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8320755 8326180 - ClG42_05g0093900.10 Clacu05g0939 248686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0939 851 MobiDBLite consensus disorder prediction 794 823 - -
Clacu05g0939 851 Pfam HSF-type DNA-binding 583 672 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0939 851 Coils Coil 713 740 - -
Clacu05g0939 851 Pfam Predicted transmembrane protein 161AB 226 406 IPR019395 -
Clacu05g0939 851 PRINTS Heat shock factor (HSF) domain signature 621 633 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0939 851 PRINTS Heat shock factor (HSF) domain signature 583 606 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0939 851 PRINTS Heat shock factor (HSF) domain signature 634 646 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0939 851 MobiDBLite consensus disorder prediction 781 831 - -
Clacu05g0939 851 FunFam Heat stress transcription factor B-4 575 673 - -
Clacu05g0939 851 Gene3D - 575 673 IPR036388 -
Clacu05g0939 851 SUPERFAMILY Winged helix DNA-binding domain 580 672 IPR036390 -
Clacu05g0939 851 PANTHER RE42071P 7 410 IPR019395 -
Clacu05g0939 851 SMART hsfneu3 579 672 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0939 851 ProSitePatterns HSF-type DNA-binding domain signature. 622 646 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0939 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0939 Clacu-Chr5:8320755 Clacu05g2195 Clacu-Chr5:30548182 2.40E-43 dispersed
Clacu01g2378 Clacu-Chr1:34468899 Clacu05g0939 Clacu-Chr5:8320755 4.20E-28 transposed
Clacu04g0365 Clacu-Chr4:13437250 Clacu05g0939 Clacu-Chr5:8320755 3.60E-37 transposed
Clacu01g0304 Clacu-Chr1:3000734 Clacu05g0939 Clacu-Chr5:8320755 4.90E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g621 . . . Bda07g01857 . . . . . Cmo18g01260 . . . . . . . Bhi01g01342 . . . Hepe07g0172 . . . . . . . . . . . . . Lsi05g01244 . . Cme06g00982 . . . . . . . . . . . . Cma18g01238 . Car18g01141 . . . . . . . . . Cla05g00865 Cam05g0952 Cec05g0957 Cco05g0957 Clacu05g0939 Cmu05g0897 Cre05g0981 . Csa03g01696 Chy06g00931 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47663 PF10268 Tmemb_161AB 2.30E-12 No_clan Clacu TF