Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0960 ATGCCCATCCACAATGGGGATGACACGTTTACAGGGTGGGTGAGAAGAAAAGGGGAAGCGGCTACATATACACTTGGAGAGAGAGGGCGTGTGAAATTTCTGCAGAGGGAGAAAAGGAAGCCGCCGGTGTGGGTCTCCCCATCCATCTGCTTCAGCGTCCGGTTCGCTGTTACGTTACCAGCGTGCGTATTCTCCGGTTTGCAGGGGTATTTCAGTCGTGTGGGTCTCCGATTTAGAGAGGGTGTTTGTCCGGTGTTTGGGTCTCGGTTTCAGAGGCCGTATTTGGTGCGTGGTCTCTCGGTAATCAGTTACGGCATCAAATATGCCGTCCACATTATCACTGCACACTTCGGAAATCTCGTCGCTAAAGTGTGCGAAACCCTGCTCCGAAAGGGACCTCTAACGCTGAGACTTCTTATACGATTCACAGAACTTACCTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTTCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGCTGATACACAATACTTGGCATTATTTAGTAATATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTCGAGAAAGATAAAGATTGTGAAGAACTTCTCGAGGGTCTCCTGCAGAATGGCAGGCTTTCAATGGAACAAATGGTTGAAAGAGCACAGTCAAGTAAAAGTGCAGGAAACCGTCCAATCCCGGATGTTGTACATGACAGTCTATCTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCAAAGTTGAAGAACAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTGTAGAATCAGCACGCCCAATGGAAGTTCTAAGATTTTCAATGGGTGATACTAACACAGAAGCTGGAAAGAGTGAACATTATTCACAAATATCTGGACAGAAGCGCAAGCACGATGATCTGGAGACGGTGCAAGATTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCCAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTTGATGACGGAGTGGTAAATGTGTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATTGTGAAAACAGAGATAACAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCCGCATTGGGTTGTCCGGGGATGGATGATTATAAAATTAATTTACGGAAGATCATTGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTTTAAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTCCTGTCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCATTTGTTGATAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAATACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGGCATTCCCTATGCCTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAAGAAGACAAAGAGCTGCTGAGTCTTCCACCAGATAATCGCAACGAGCCGCTCAAGAAAAGATTTAATCGTTTGAGGAATGTCAGAGGACTCCTGCAGTCGTCACTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTAA 1863 44.02 MPIHNGDDTFTGWVRRKGEAATYTLGERGRVKFLQREKRKPPVWVSPSICFSVRFAVTLPACVFSGLQGYFSRVGLRFREGVCPVFGSRFQRPYLVRGLSVISYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSSKSAGNRPIPDVVHDSLSKLLTAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEAGKSEHYSQISGQKRKHDDLETVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCPGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8453452 8461016 + ClG42_05g0096000.10 Clacu05g0960 248707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0960 620 MobiDBLite consensus disorder prediction 269 293 - -
Clacu05g0960 620 Pfam POLR3C, C-terminal winged-helix domain 468 529 - -
Clacu05g0960 620 Gene3D - 363 457 IPR036388 -
Clacu05g0960 620 FunFam DNA-directed RNA polymerase III subunit rpc3 188 275 - -
Clacu05g0960 620 Gene3D - 458 544 IPR036388 -
Clacu05g0960 620 MobiDBLite consensus disorder prediction 323 344 - -
Clacu05g0960 620 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 104 620 IPR039748 GO:0003697(InterPro)|GO:0005666(InterPro)|GO:0005666(PANTHER)
Clacu05g0960 620 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 108 167 IPR013197 -
Clacu05g0960 620 Gene3D - 189 274 IPR036388 -
Clacu05g0960 620 FunFam DNA-directed RNA polymerase III subunit RPC3 101 186 - -
Clacu05g0960 620 Gene3D - 102 174 IPR036388 -
Clacu05g0960 620 Pfam RNA polymerase III subunit RPC82 254 435 IPR008806 GO:0003677(InterPro)|GO:0006351(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0960 K03023 - - csv:101211588 915.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g694 . . . Bda07g01875 . . . . . Cmo18g01272 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0081 . Lsi05g01220 . . Cme06g01005 . . . . . . . . . . . . Cma18g01249 . Car18g01156 Cpe09g00088 . . . . . . . . Cla05g00886 Cam05g0973 Cec05g0977 Cco05g0976 Clacu05g0960 Cmu05g0917 Cre05g1001 . Csa03g01718 Chy06g00950 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004329 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 1 2 40