Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0962 ATGAGTCCGCCCGCCGTCGAATCTCCCTTACTTCTTCTTTTCCTGCTTGCTGCAGCGCTGCGGTGCCCTCTCGCCGGAGCGCGCCTTCTGGTGGAGATGACGGTGGTCCGAAACGCCTCTTCCATCGGAGCCTTTTGTTTGGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGAGCGGGAAACTGGCTTTTACAGTTCGAGGGTGGTGGGTGGTGCAATGATGTAAAGTCTTGTTTGGAGAGAGCGAATAGTCGAAGAGGATCAACGCGTTTAATGACCAAATGGGAAGACTTCTCTGGCATTCTTAGCAACAATGCTTCTCTTAATCCAGATTTTTATAACTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCATTTGCTGGAGATGCCTTGTTTGACAATGGGATATCGCTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCATTCTTGACCTTCTACCAAAAGGGTTGGGGACAGCAAGGAAGGCTCTGCTTTCTGGTTGCTCTGCTGGAGGTTTAGCAACTTTTCTTCATTGTGAAAATTTCACCAAGTATTTGCCAAGGAATGCTAGTGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGAGACATTGGTCTAAACCACACAATGAGGAACTTTTATAGGGATCTTGTGGCTCTTCAGGGGATGGAGCAAAATTTGAATGAAAACTGCACAGCCTCCTCTTACTTTCCAGAATTGTGCATATTCCCTCAGTATTCATTGAAGTACATAACAACACCATTTTTCATTCTGAATTCAGCATATGATGTTTACCAATTTCATCATGGGTTGGTGCCACCATCTGCTGATTTACATGGACATTGGAACCATTGCAAATTTAATCCAGCAGAGTGTAGTGAACTACAGATTCAGGCATTGCAAGGTCTAAGAATGAGTATGCTTTCTGCATTAAGATTATTCTATGAATATTCAAGCAGAGGAGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAGTCACAAGACACATGGTTTGCTGACGACTCCCCAACAATAGACAACAAGACTATAGCAGAAGCAGTTGGAGATTGGTATTTTAGCAGGAGAAACACAAAGGAAATTGATTGTGCATATCCATGTGACTCTACTTGCCATAATATTATACCATAA 1194 43.72 MSPPAVESPLLLLFLLAAALRCPLAGARLLVEMTVVRNASSIGAFCLDGSLPAYHLDRGFGAGAGNWLLQFEGGGWCNDVKSCLERANSRRGSTRLMTKWEDFSGILSNNASLNPDFYNWNRVKLRYCDGASFAGDALFDNGISLLYFKGQKIWESIILDLLPKGLGTARKALLSGCSAGGLATFLHCENFTKYLPRNASVKCLSDAGFFLDLRDIGLNHTMRNFYRDLVALQGMEQNLNENCTASSYFPELCIFPQYSLKYITTPFFILNSAYDVYQFHHGLVPPSADLHGHWNHCKFNPAECSELQIQALQGLRMSMLSALRLFYEYSSRGGMFINSCFAHCQSESQDTWFADDSPTIDNKTIAEAVGDWYFSRRNTKEIDCAYPCDSTCHNIIP 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8482553 8498035 - ClG42_05g0096200.10 Clacu05g0962 248709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0962 397 PANTHER NOTUM-RELATED 26 394 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Clacu05g0962 397 Pfam Pectinacetylesterase 28 377 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0865 Clacu-Chr4:23001627 Clacu05g0962 Clacu-Chr5:8482553 8.10E-115 dispersed
Clacu05g0962 Clacu-Chr5:8482553 Clacu07g1119 Clacu-Chr7:25832739 4.80E-95 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0962 K19882 - csv:101216160 771.541