Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0963 ATGCAAGACTTCGGAGTGGCTAAGAGGGAGGGTCCTGAGTTCGAAGAGCTTCAAAGTCCAAGGTCCCGTCGACCTCTTGTCTGGCTACTGAGGAAACCCGGGGATTGTCTCGAGAAATTAGTATTTGAAGCCTTACGACGGTTGCATGAATTTCTCTGGTCAAGCTTACATCAGAGAAAGAATGCAACTTTGTTTATTATGGAATCTTTATGGAAACTTCTATATTTGCTGGAACCTGCACCTGCCACTCTCATTGTGACTGCAGTGGCTGTTACATTTGGATCTGCTTTCCGGGCCCTAAATTATGGGAAGGAAATGGAGCGAAACCGTGACTTTTCAGAAGCATCTATTACCTTAGACAGATCCCAAGCGCTAATGATCCCAGTTATGAGTTCTTGCAGTTTGCTTTTGATGTTCTACCTGTTTTCTTCTGTGTCCCAACTTCTTACTGCATTCACAGCAGTTGCTTCTGTCTCATCCCTCTTCTTCTGTTTATCTCCTTACATGGCCTATTTAAAATCCCAGTTTGGATTGGCTGATCCTTATGTATCAAGGTGTTGTTCCAAGTCATTTACACGTATTCAAGGGTTGTTGTTGTTGGCATGTTCTGGTTTAGTTGCAGCTTGGCTTGTTTCTGGGCATTGGATATTAAACAATTTGTTAGGAATTTCAATATGTGTTGCATTTGTCAGCCATGTACGTCTCCCTAATGTTAAAATATGTGCAATGCTCCTAGTTTGTCTCTTTGTATATGATATATTCTGGGTCTTCTTCTCTGAGAGATTCTTCGGGGCAAATGTAATGGTATCTGTAGCAACTCAGCAAGCATCAAATCCTGTTCACACAGTTGCCAATAGTCTGAGTCTTCCTGGGCTGCAATTGATAACTAAGAAGCTGGAGTTACCTGTCAAGATAGTTTTTCCAAGGAACTTACTTGGTGGAGTAATTCCAGGAAAAAATGCCACTGATTTCATGATGCTTGGTCTTGGTGATATGGCAATTCCTGCCATGTTTCTAGCTCTAGTTCTTTGTTTTGACCACCGGAAAAGTAGGGATACAGTCAATCTCTTGGATTTCCACACAAGGGGCCACAAGTACATTTGGTATGCCCTGCCCGGATATGCCATTGGACTGGTGACCGCTCTAGCAGCTGGCGTTTTGACTCACTCACCTCAACCTGCTCTATTGTATCTGGTGCCTTCTACATTAGGACCTGTTATTGCAATATCTTGGATAAGGAAGGATTTTTTGGAGTTATGGGAAGGTCCCTCGCCGAACCCCAATGATAAAGTAGTAGAAGTGACACCTCTTTGCGGGGTGTTCAATGAAAACCCTTTATCGTATTTGGTCTCTGTTGACGGTTTCAACTTCCTTATCGACTGTGGTTGGAACGACCACTTCGATCCTGCTCTTCTTCAACCTTTATCCAGGGTGGCATCCACGATTGATGCAGTTTTGATATCACATCCTGATACACTTCACCTCGGTGCTCTTCCTTATGCCATGAAACAACTTGGACTTTCTGCTCCAGTTTATTCCACTGAACCCGTTTACCGATTGGGTCTTCTTACAATGTATGATCAGTTTATCGCGAGGAAGCAAGTATCAGAGTTTGATCTATTTACGCTGGATGATATCGATTCTGCTTTCCAAGTTGTAACCAGACTAACATACTCCCAGAATCATCATCTTTCAGGCAAAGGAGAGGGAATAGTTATTGCCCCTCATGTGGCTGGGCATCTATTGGGTGGAACTCTATGGAAGATAACTAAGGATGGAGAAGATGTTATATATGCTGTTGACTTCAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTTGTGCGACCTGCTGTATTGATCACTGATGCTTATAATGCTCTAAATAATCAGCCATACAGACGGCAAAAGGACAAAGAATTTGGAGATACTATTCAGAAGACCTTAAGATCTAATGGAAATGTCTTACTTCCTGTTGATACTGCTGGGCGAGTGTTGGAGCTTATTCAAATTTTGGAATGGTACTGGGAAGAGGAAAGTTTAAACTATCCCATTTTCTTTTTAACTTACGTTGCATCCAGCACAATTGATTATATCAAGAGTTTCCTAGAGTGGATGAGTGATACAATAGCAAAGTCTTTTGAACACACACGGAGCAACGCTTTTCTTCTCAAGCATGTTACCCTTCTAATCAACAAAAGTGAACTTGATAATGCTCCAGATGGTCCAAAGGTTGTTTTAGCATCAATGGCGAGTTTGGAAGCTGGTTACTCACATGACATTTTTGTTGACTGGGCAATGGATGCCAAAAACCTCGTCCTTTTTTCTGAAAGAGGCCAGTTTGGCACTTTGGCCCGCATGCTTCAAGCAGATCCACCTCCCAAAGCTGTTAAGGTAACTGTGTCTAAGAGAGTCCCTTTGACTGGAGATGAGCTTATTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGAAGGAACAATCTAAAGCATCTCATGGAACTGAGAATGATACCAGCGATCCAATGATCATTGATGCTAGCAGTAATGTAGCACCAGATGTAGGGGGTTCACATGGAGGTGCATACAGAGACATACTAATTGATGGCTTTGTTCCTCCTTCAACCAGCATTGCTCCAATGTTTCCCTTTTATGAAAACACCTCCGCGTGGGATGATTTTGGTGAAGTAATCAATCCTGATGATTATGTAATTAAGGATGAAGATATGGACCAATCAGCGATGCATGCTGGTGGGGATGTGGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTGGATATGAAGCCTTCGAAAGTTGTATCTAATGAATTGACAGTCCAAGTTAAATGCTCGTTGCGTTACATGGATTTTGAAGGTCGTTCAGATGGGAGATCAATTAAATCAATACTCTCCCACGTTGCTCCCTTGAAGCTTGTTTTGGTGCATGGAACCGCAGAGGCCACTGAGCATCTTAAGCAACATTGTCTTAAAAATGTCTGTCCCCATGTCTATGCCCCCCAAATTGAAGAAACGATTGATGTTACTTCTGATTTGTGTGCATATAAGGTACAACTTTCAGAGAAGCTGATGAGTAATGTGCTGTTTAAGAAGCTAGGAGATTACGAAATCGCTTGGCTTGATGCTGAAGTAGGGAAGACCGAGAATGGAACATTGTCTTTACTTCCCCTCTCAAAGGCTGCTTCGCCTCATAAATCTGTTCTTGTTGGTGATTTGAAAATGGCCGACTTCAAACAATTTCTGGCCAGCAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCTTACGCAAGGTTACAGATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGGGCCCTTATGTGAGGATTATTATAAAATTCGGGAACTTTTGTATTCACAATTTTATTTGCTATATTCAACCTCAAATTTTCTTTTTTGCAATTTCAAGTTTGAATTATCCGCAAGAGGATCTTTCATGGCTTCCACTCCCCCCACGTGTTCACCCAGCTCTCTTCAGCTTCGTCTCGCTCTCAATTGCAAGAATTGCGGCAAATTCCCTTCAGTTCTTGTTCGGGCAGGAGTGAGGAAATTGGATCCTCGCCTCCGCGTAATTTGTCACCCTATTGTTCATAATGGCGCCAAAATCGAGAGAGGAAATGGACTTCGTCGTATTGGAGTTTGTTTTGCTGGATCGGAGTCGACGGCTGATGGATTCTCTGGGTGGTCGGAATCGGATTCCCAGGGAGAGGCTTTGGACTTGCGGAGAAAGAAGTGGTTTGGAGGATTGGTGGGGATTGGAATTACTGGATTCATCCTTTTCTCTGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAATAGTTCCAGACAAAAACCGCTGATGGAGGCCTTAAGTACGCAGCAAGAGTTATTGTTGGACTCTGATACTGTTAATGATAAGCTTGGTGAAGATGAAAAGGAAGATAACAGTTTGAAGGCAGATGATGAAACTCTCGCTGGTGAAACAGGTAACCAAGAGGACTCTTGTTCATGTACAGAAAATGAAGAAACTCTCAACAAAAATAGAGTTGGTGACAGTGTTGATGTTGAGGAGTTAGCAGAAAATGATGTTGAATCTTCATCCAGCAATAACGATGTCAATAATGTTGCTTCCTTGCAAGAAGATTTCCAATCTGATTCCTCACTAACTGTTACATCAGTTGCTGCCGGAAGTTTGAGTACACTTATCTCACCTGAATCTGAGTTTGATTCTAACATAGCTTCTTGTTTTAAAGATGTAAACAACTGTCATTCTGGTGTAGAAGTCTTAACTTCTGAACCTGAAATGAATATATTGAAAGATGAACCAGACAACTTGCCTAACTCTAATACTAATTCATTAAACCTTAAAACTGATATTTGGGATGAAAGACCTGACACTGGTGAAAATTATGATTTCAGCTCTAATAAGTTACCAGTGTATGATGATAGTTCATCAAACTATAATTCTGGCAACCAGGATGAGACACTTGGTCCTGTAAATGAAATTACAGATTCTTCATTGGAAGGATTTTCTAGCATATCTGGCGACACAACCAAGGAATCAGGATTTTTTGACAGGGAGACTGTGGCTGAATCATCTGAAGGAGTTCTGAGCCCCAGAAAAACTGAACAGCTTTTATCTGAGGATACTGCATCAACCATAGAACAGCAAATAGAAAGAGGATTATCTGAAGCAGTATTAGTCTCTATCACGGATTATCCATCGGCAGATGATCAAGAGAAAAATCATGAAACTATCATGAATACTACTGCTGCCAAACCGGAACTACAAGAAATTTTATTTTCTTCTGCAGGTGTTCCTGCTCCTTTGGTTTCTGCAGCTGTTAAAACACTTCCCGGCAAGGTCCTAGTTCCTGCAGTAGTAGATCAGGTTCAGGGGCAGGCATTGGCAGCACTGCAAGTTTTAAAGGTGATAGAGGCTGAGGTTGAACCTAGTGATCTATGTACTCGTCGGGAATATGCTCGTTGGCTGGTGTCTGCAAGCAGTGCTCTTTCGAGGAACACAACATCCAAAGTATACCCAGCAATGTATATAGAAAATGTTACCGAGCTTGCTTTTGATGATATAACCCCCCAAGACCCTGATTTTGCATCTATTCAAGGTTTGGCAGAAGCTGGACTGATTTCAAGCAAGCTTTCGAGACATGATATTTGTTCTTCATTGGACGAAGACCAGGGTCCTTTATATTTCTCTCCCGAAAGCCCCCTATCACGTCAAGATCTTGTGAGTTGGAAGATGGCCCTTGAAAAAAGGCAGCTTCCAGAGGCAGATAGAAAGATGCTCCACCAAGTTTCTGGATTTATTGATACTGATAAGATCCATCCAGATGCTTGTCCTGCACTTGTTGCTGATCTTTCTGTAGGAGAACACGGAATAGTAGCTCTTGCATTTGGATATACAAGGCTTTTCCAGCCAGATAAGCCTGTAACAAAAGCACAAGCTGCCATTGCTCTTGCAACTGGGGAGGCTTCTGATATAGTAAGTGAGGAACTTGCAAGGATTGAAGCTGAATCAATGGCAGAAAATGCTGTTGCTGCGCATAGTGCTTTGGTAGCTCAAGTTGAGAAAGATATTAATGCTAGCTTTGAGAAAGAACTTTCCATTGAAAGAGAAAAGGTTGCGGCTGTGGAGAAAATGGCAGAAGAGGCAAAGCAAGAATTGGAAAGATTAAGATCTGAAAGAGAGAGAGATAGTATCACCTTGATGAGGGAACGCGCTTCTATTGAATCTGAAATGGAAGTTCTTTCAAGATTAAGGAATGAGTTGGAGGAGCAGTTGCAAGGCCTGCTGAGTAATAAAGTAGAGGTATCCTTTGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAATCAGGAGATTTCCCGCCTGCAGTATGAGCTTGAAGTTGAGAGAAAGGCGTTGTCTATGGCCAGAGCTTGGGCCGAGGACGAAGCAAAAAGAGCAAGAGAACAAGCAAAAGCACTCGAAGAGGCTAGGGATCGCTGGGAAAAGCATGGCATCAGAGTAGTCGTCGACAGCGATCTCCGTGAACAAGAATCTGCTGGCGATACCTGGCTTGATTCTAGCAAACAGTTTGCAGTCGAAGAAACCACAGACAGGGCTGAGAACTTAATGGAGAAGCTGAAAAGAATGGCTACAGAAGTAAGAGGGAAATCGAGAGACGTAATTGAGAAGATCATCGAGAAGATAGCTTTACTAGTATCAAACTTGAGACAATGGATTTCAAAAACTGGAGAACAGGCTGAAGATCTAAAGAATGTGGCGATTTCAAAGGCAAGTAGATCAGCAACAGAATTGCAACAGAGCACTGCAGAGTTGAGCTTGGCCCTGAAGGAGGGAGCAAAGCGTGTTGTGGGAGATTGTAGGGAAGGAGTAGAGAAAATTACCCAAAAATTTAGAACATCTTATGGTTAA 6555 42.32 MQDFGVAKREGPEFEELQSPRSRRPLVWLLRKPGDCLEKLVFEALRRLHEFLWSSLHQRKNATLFIMESLWKLLYLLEPAPATLIVTAVAVTFGSAFRALNYGKEMERNRDFSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLSPYMAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLACSGLVAAWLVSGHWILNNLLGISICVAFVSHVRLPNVKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLLGGVIPGKNATDFMMLGLGDMAIPAMFLALVLCFDHRKSRDTVNLLDFHTRGHKYIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVIAISWIRKDFLELWEGPSPNPNDKVVEVTPLCGVFNENPLSYLVSVDGFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDIDSAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRSNGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRSNAFLLKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKKEQSKASHGTENDTSDPMIIDASSNVAPDVGGSHGGAYRDILIDGFVPPSTSIAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQSAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLRYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAASPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLLYSTSNFLFCNFKFELSARGSFMASTPPTCSPSSLQLRLALNCKNCGKFPSVLVRAGVRKLDPRLRVICHPIVHNGAKIERGNGLRRIGVCFAGSESTADGFSGWSESDSQGEALDLRRKKWFGGLVGIGITGFILFSGITFAAWSINKQNSSRQKPLMEALSTQQELLLDSDTVNDKLGEDEKEDNSLKADDETLAGETGNQEDSCSCTENEETLNKNRVGDSVDVEELAENDVESSSSNNDVNNVASLQEDFQSDSSLTVTSVAAGSLSTLISPESEFDSNIASCFKDVNNCHSGVEVLTSEPEMNILKDEPDNLPNSNTNSLNLKTDIWDERPDTGENYDFSSNKLPVYDDSSSNYNSGNQDETLGPVNEITDSSLEGFSSISGDTTKESGFFDRETVAESSEGVLSPRKTEQLLSEDTASTIEQQIERGLSEAVLVSITDYPSADDQEKNHETIMNTTAAKPELQEILFSSAGVPAPLVSAAVKTLPGKVLVPAVVDQVQGQALAALQVLKVIEAEVEPSDLCTRREYARWLVSASSALSRNTTSKVYPAMYIENVTELAFDDITPQDPDFASIQGLAEAGLISSKLSRHDICSSLDEDQGPLYFSPESPLSRQDLVSWKMALEKRQLPEADRKMLHQVSGFIDTDKIHPDACPALVADLSVGEHGIVALAFGYTRLFQPDKPVTKAQAAIALATGEASDIVSEELARIEAESMAENAVAAHSALVAQVEKDINASFEKELSIEREKVAAVEKMAEEAKQELERLRSERERDSITLMRERASIESEMEVLSRLRNELEEQLQGLLSNKVEVSFEKERINKLRKEAEIENQEISRLQYELEVERKALSMARAWAEDEAKRAREQAKALEEARDRWEKHGIRVVVDSDLREQESAGDTWLDSSKQFAVEETTDRAENLMEKLKRMATEVRGKSRDVIEKIIEKIALLVSNLRQWISKTGEQAEDLKNVAISKASRSATELQQSTAELSLALKEGAKRVVGDCREGVEKITQKFRTSYG 2184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8506793 8527950 + ClG42_05g0096300.10 Clacu05g0963 248710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0963 2184 SMART Lactamase_B_5a 444 649 IPR001279 -
Clacu05g0963 2184 Pfam Metallo-beta-lactamase superfamily domain 449 624 IPR001279 -
Clacu05g0963 2184 SUPERFAMILY Metallo-hydrolase/oxidoreductase 432 1028 IPR036866 -
Clacu05g0963 2184 Coils Coil 819 839 - -
Clacu05g0963 2184 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 960 1011 IPR011108 -
Clacu05g0963 2184 Coils Coil 1979 2006 - -
Clacu05g0963 2184 CDD CPSF2-like_MBL-fold 435 630 IPR035639 -
Clacu05g0963 2184 MobiDBLite consensus disorder prediction 1342 1357 - -
Clacu05g0963 2184 MobiDBLite consensus disorder prediction 1496 1586 - -
Clacu05g0963 2184 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1187 2181 - -
Clacu05g0963 2184 FunFam Cleavage and polyadenylation specificity factor subunit 2 433 682 - -
Clacu05g0963 2184 Coils Coil 1909 1943 - -
Clacu05g0963 2184 SMART psh_8 115 413 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Clacu05g0963 2184 Coils Coil 1948 1975 - -
Clacu05g0963 2184 MobiDBLite consensus disorder prediction 1364 1379 - -
Clacu05g0963 2184 MobiDBLite consensus disorder prediction 1342 1388 - -
Clacu05g0963 2184 Pfam Beta-Casp domain 669 792 IPR022712 -
Clacu05g0963 2184 MobiDBLite consensus disorder prediction 1571 1586 - -
Clacu05g0963 2184 Pfam Cleavage and polyadenylation factor 2 C-terminal 1069 1162 IPR025069 -
Clacu05g0963 2184 Coils Coil 2018 2045 - -
Clacu05g0963 2184 Gene3D - 436 683 IPR036866 -
Clacu05g0963 2184 MobiDBLite consensus disorder prediction 835 855 - -
Clacu05g0963 2184 SMART Beta_Casp_2 669 792 IPR022712 -
Clacu05g0963 2184 Pfam Signal peptide peptidase 115 424 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Clacu05g0963 2184 Coils Coil 2074 2101 - -
Clacu05g0963 2184 MobiDBLite consensus disorder prediction 1506 1555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0963 K14402 - - csv:101215673 1420.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0963 Clacu-Chr5:8506793 Clacu05g2504 Clacu-Chr5:33128890 6.60E-45 dispersed
Clacu11g1588 Clacu-Chr11:27029764 Clacu05g0963 Clacu-Chr5:8506793 1.10E-25 transposed
Clacu01g0260 Clacu-Chr1:2542867 Clacu05g0963 Clacu-Chr5:8506793 2.10E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30