Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0965 ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGTGAAGAAGAAAACAAGCAAGGAAAGTTTCATCGACTCATTACACCGAAAGTTTAAGAATTCACCTGAAGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAATGTGGTGGTGACACTATATCTGAGAAAGGGTCCAAATCACCAATATCAAGATCGCCATCACCTTCCAAAGAAGTTGCTAGATGTCAAAGTTTTGCAGAAAGATCGTGTTCTCACAAACTTCCACTTCCAGATTTGCACCCTGTAGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGACAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCTTTATTCCTACCCCTCCCTAGACCTGCTTGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTTTGGTGAGTCCTCAAGTGATAGTGATGATCCCAGTGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACATTGGGGCTAGAACTGTGATAGGTTCTACTGAAGCTAGTGAAACTCTCAAGGATCAGTCTCCTACTGTCGTGCAAATAAATCTAAAAGAGGGCAAGAAATCAGAAAGCCTTCCATTTCCTCATAAGAATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCCATGAGGATATTTAGCACTGAGCAAGTCATGAACGCTGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCATTTTAGCTGGATCTGGCCCTTGTTCCAGTCCTGGCTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGGCCACTTCTTTTGGCAACAAAGTAAGGGTAGCCCCGAATATTCTCCTGTACCTAGTTCTAGAATGACTAGCCCCGGTCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCGAGAGCAGGAGCTCCACCTGCTGAGTCACAATCATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCCTCTCCATTTTCGCATTCGAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGAGAGATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTGAGGCATCCCAACATTGTGCAGTATTATGGTTCGGAAGCAGTGGGTGATAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTTCAAGAGTATGGGCAATTTGGGGAACTAGCAATTCGTAACTATACTCAACAAATACTATCAGGACTTGCGTATTTGCATGCTAAAGCTACGGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCAAATGGTAAAGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACCGGCCAATCATGTCCACTATCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGCAACCTTGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCCTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAGAGAACTCCCAGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAAACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCTTTTGTCAAAAACGCTGCACCTATAGAGAGGCCTATTTTGAGCTCTGAGCCTTCGGATACAACTCCAGGAGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTATGGACTCGGATAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGCTCTTCATGCCAGTGAAATCAATATTCCCCGAAACATATCATGTCCTGTTTCACCAATCGGAAGCCCTCTTTTGCATTCACGATCCCCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATTTCAAGTCCTCGAACCACTTCGGGCTCGTCCACACCTTTGACAGCATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATTCTTGCAAGATGGATTCGGAAGCATGCCAAAGTCCTTAAATAGTAGTCCATACTGCAGCGGTATCTCATTCCACGACTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAAATGATACCAGAAAACGATATCTTGGGAAAGCAGGTTGGACGGCCTGCTTATGGTGAGTTGTATGATGGCCAGCAGGTCCTGGCTGACCGAGTATCTCGTAAGCTCTTACGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCACTACATTGTCTGGCCGCATGAATGGTATCTGA 2694 45.03 MPSWWGKSSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSRKCGGDTISEKGSKSPISRSPSPSKEVARCQSFAERSCSHKLPLPDLHPVGVGRTDSGISVTAKSKLERSSKTSLFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPSDSRQRSPQATDYDIGARTVIGSTEASETLKDQSPTVVQINLKEGKKSESLPFPHKNSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNAAVWAGKSHPDVILAGSGPCSSPGSGHNSGHNSMGGDMAGHFFWQQSKGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQSCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSEAVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRNYTQQILSGLAYLHAKATVHRDIKGANILVDPNGKVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSRELPVIPEHLSDDGKDFVKLCLQRNPHHRPTAAQLLEHPFVKNAAPIERPILSSEPSDTTPGVTNGVKILGIGQSRTTSMDSDSRLAVHSSRVSKAALHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTACGGAIPYNHLKQAIFLQDGFGSMPKSLNSSPYCSGISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRKLLRDHVKTNPSLDLSPSTTLSGRMNGI 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8561300 8567064 - ClG42_05g0096500.10 Clacu05g0965 248712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0965 897 MobiDBLite consensus disorder prediction 371 403 - -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 285 412 - -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 313 340 - -
Clacu05g0965 897 FunFam Mitogen-activated protein kinase kinase kinase 408 691 - -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 878 897 - -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 103 117 - -
Clacu05g0965 897 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0965 897 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0965 897 MobiDBLite consensus disorder prediction 9 35 - -
Clacu05g0965 897 SUPERFAMILY Protein kinase-like (PK-like) 408 755 IPR011009 -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 880 897 - -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 204 225 - -
Clacu05g0965 897 CDD STKc_MEKK1_plant 409 666 - -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 1 176 - -
Clacu05g0965 897 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
Clacu05g0965 897 MobiDBLite consensus disorder prediction 745 776 - -
Clacu05g0965 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 43 671 IPR050538 -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 741 776 - -
Clacu05g0965 897 SMART serkin_6 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0965 897 Gene3D Transferase(Phosphotransferase) domain 1 408 685 - -
Clacu05g0965 897 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1606 Clacu-Chr1:28072097 Clacu05g0965 Clacu-Chr5:8561300 8.10E-118 dispersed
Clacu01g1732 Clacu-Chr1:29492811 Clacu05g0965 Clacu-Chr5:8561300 7.30E-96 dispersed
Clacu02g1622 Clacu-Chr2:29663842 Clacu05g0965 Clacu-Chr5:8561300 4.00E-73 dispersed
Clacu05g0965 Clacu-Chr5:8561300 Clacu08g1718 Clacu-Chr8:26694640 1.10E-89 dispersed
Clacu01g0316 Clacu-Chr1:3131448 Clacu05g0965 Clacu-Chr5:8561300 2.20E-27 transposed
Clacu03g0915 Clacu-Chr3:11710322 Clacu05g0965 Clacu-Chr5:8561300 9.40E-65 transposed
Clacu11g1974 Clacu-Chr11:30675950 Clacu05g0965 Clacu-Chr5:8561300 3.10E-53 transposed
Clacu01g0468 Clacu-Chr1:4654657 Clacu05g0965 Clacu-Chr5:8561300 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73561 PF00069 Pkinase 1.40E-71 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0965 K20717 - csv:101214961 1587.78