Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g0975 | ATGGTAGTTTCACTGAGACTACCTTTGATCTCCTCCTTGCTTTCCCCAGCCTCATCTCGCCCTTCAAACTTCGCCTTCTCCAGGCGAGCTTTGGGGATTTCATGGAGGCAGCAACGCCCGTTACGGTTGCCGCTGCTTTCTTCTAGTTTCTCTGCTCGAAGTTCGTCCACCGGCACCGAAATTCGTGTCGACAACTCGAAGAATCGAGTTCCGGAAGGAGCTATCACGCCTCGGTCGCAGGACTTCAATGCTTGGTATCTGGATATTATTGCCAACGCTGAGCTCGCGGATTATGGTCCTGTTCGAGGTACCATGGTTATTCGTCCCTATGGCTACGCCATATGGGAGGCAATACAGGTATATTTAAATGCCAAGTTCAAGGAAACCGGCCACGAGAATATGTACTTTCCGCAGTTTATACCATACTCTTTTATTGAGAAAGAAGCTAGTCATGTCGAGGGGTTTAGTCCAGAGTTAGCTCTTGTAACAATTGGAGGAGGGAAAGAACTCGAAGAAAAGCTTGTGGTTCGACCGACAAGTGAAACCATTGTGAATCACATGTTTACTCAGTGGATTCATAGTTACCGTGATCTTCCTTTGATGATTAATCAGTGGGCCAATGTTACTAGATGGGAGATGCGCACGAAACCATTTGTTAGGACTCTTGAATTTCTCTGGCAGGAGGGTCATACTGCTCATGCCAGTCCAGAAGAGGCAGAAAAAGAGGCTATTCAGATGATTGACATATATACAAAATTTTCTTATGAGCAAGCAGCAATACCTGTTATTGCAGGTCGAAAATCAAAGATGGAGACATTTGCTGGTGCAGACAAGACCTATACAATAGAGGCCATGATGGGGGATCGAAAGGCATTGCAGGCAGGAACCAGCCACAACCTGGGGCAAAACTTTTCTCGTGCTTTTGGAACACAGTTCACAGATGAAAATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAGTGAGTACGCGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCGCCAAAGCTTGCTCCAATACAGGTGGTAATCATACCCATCTGGAAGAAGGATGGTGATAAAGCTGAAGTTCTTAGTGCTGCTTCTTCTGTAAAAGAAAGTCTTCAAACTGCAGGGATAAAGGTTAAACTTGATGAGTCAGAACAGAGAACTCCAGGATGGAAATTCAATTTCTGGGAGATGAAGGGCGTTCCTTTGAGGATTGAGATTGGGCCCAAGGATGTTGCAAGTCAAAGTGTCGTTATATCTAGGAGAGACATTCCTGGAAAGCAAGGGAAAGTTTTTGGAATATCTATGGAACCTTCTATTTTAGAAGCTTATGTAAAAGGAACATTGGATGAGATCCAGTTATCTCTTCTTCAACGGGCAAAAACTTTTCGTGACAGTAACATTGTGGATGTGAGCTCATATCATGAACTTAAAGAGGCAATCTCCGAGGGCAAATGGGCTAGGGGTCCTTGGTCAGCTAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACAGGAGCAACAATTAGGTGCTTTCCCTTTGAACAGCCACAAGGGCCTAAAACATGTCTGATGACTGGTAACCCTGCTGAGGAAGTTGCCATTTTTGCAAAGTCTTACTGA | 1659 | 44.54 | MVVSLRLPLISSLLSPASSRPSNFAFSRRALGISWRQQRPLRLPLLSSSFSARSSSTGTEIRVDNSKNRVPEGAITPRSQDFNAWYLDIIANAELADYGPVRGTMVIRPYGYAIWEAIQVYLNAKFKETGHENMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHASPEEAEKEAIQMIDIYTKFSYEQAAIPVIAGRKSKMETFAGADKTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHVWQTSWAVSTRFVGGIIMTHGDDGGLMLPPKLAPIQVVIIPIWKKDGDKAEVLSAASSVKESLQTAGIKVKLDESEQRTPGWKFNFWEMKGVPLRIEIGPKDVASQSVVISRRDIPGKQGKVFGISMEPSILEAYVKGTLDEIQLSLLQRAKTFRDSNIVDVSSYHELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY | 552 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 8685631 | 8689504 | + | ClG42_05g0097500.10 | Clacu05g0975 | 248722 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g0975 | 552 | SUPERFAMILY | C-terminal domain of ProRS | 480 | 552 | IPR017449 | GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | Gene3D | - | 481 | 552 | IPR017449 | GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | Pfam | Anticodon binding domain | 357 | 435 | IPR004154 | - | |
| Clacu05g0975 | 552 | Hamap | Proline--tRNA ligase [proS]. | 75 | 552 | IPR004499 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 169 | 338 | IPR002314 | GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro) | |
| Clacu05g0975 | 552 | SUPERFAMILY | Class II aaRS ABD-related | 346 | 478 | - | - | |
| Clacu05g0975 | 552 | CDD | ProRS_core_arch_euk | 81 | 340 | IPR033721 | - | |
| Clacu05g0975 | 552 | Gene3D | Bira Bifunctional Protein; Domain 2 | 70 | 350 | IPR045864 | - | |
| Clacu05g0975 | 552 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 102 | 350 | IPR006195 | - | |
| Clacu05g0975 | 552 | Gene3D | - | 351 | 476 | IPR036621 | - | |
| Clacu05g0975 | 552 | FunFam | Proline--tRNA ligase, chloroplastic/mitochondrial | 351 | 475 | - | - | |
| Clacu05g0975 | 552 | Pfam | Prolyl-tRNA synthetase, C-terminal | 486 | 552 | IPR016061 | GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | PANTHER | PROLYL-TRNA SYNTHETASE | 65 | 552 | IPR004499 | GO:0004827(PANTHER)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005737(InterPro)|GO:0005739(PANTHER)|GO:0006433(InterPro)|GO:0006433(PANTHER)|GO:0009570(PANTHER)|GO:0017101(PANTHER) | |
| Clacu05g0975 | 552 | FunFam | Proline--tRNA ligase, chloroplastic/mitochondrial | 481 | 552 | - | - | |
| Clacu05g0975 | 552 | CDD | ProRS_anticodon_zinc | 346 | 552 | - | - | |
| Clacu05g0975 | 552 | PRINTS | Prolyl-tRNA synthetase signature | 213 | 224 | IPR002316 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | PRINTS | Prolyl-tRNA synthetase signature | 204 | 212 | IPR002316 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | PRINTS | Prolyl-tRNA synthetase signature | 174 | 185 | IPR002316 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | PRINTS | Prolyl-tRNA synthetase signature | 133 | 151 | IPR002316 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | SUPERFAMILY | Class II aaRS and biotin synthetases | 81 | 344 | IPR045864 | - | |
| Clacu05g0975 | 552 | NCBIfam | proline--tRNA ligase | 76 | 552 | IPR004499 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | SMART | ProRS_C_1_2 | 486 | 552 | IPR016061 | GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Clacu05g0975 | 552 | FunFam | Proline--tRNA ligase | 70 | 350 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g0975 | K01881 | - | - | csv:101217773 | 1002.28 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g0975 | Clacu-Chr5:8685631 | Clacu07g1583 | Clacu-Chr7:30481606 | 4.80E-117 | dispersed | |
| Clacu05g0975 | Clacu-Chr5:8685631 | Clacu05g0977 | Clacu-Chr5:8697465 | 1.30E-26 | proximal |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi16g742 | . | . | Bda05g00086 | . | Bpe03g00272 | . | Bma10g01239 | . | . | Cmo18g01292 | . | . | . | . | Sed11g1514 | . | . | Bhi01g01267 | Tan01g0211 | Cmetu11g1479 | . | Hepe07g0133 | . | . | . | . | . | . | . | . | . | Cone1ag1180 | Cone5ag0884 | . | . | Lsi05g01205 | . | . | . | Blo07g00389 | . | . | . | . | . | . | . | . | . | . | . | Cma18g01263 | . | Car18g01173 | Cpe09g00073 | . | . | . | . | . | . | . | . | Cla05g00903 | Cam05g0987 | Cec05g0993 | Cco05g0991 | Clacu05g0975 | Cmu05g0932 | Cre05g1017 | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0010881 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 31 |