Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0996 ATGGCATCGACTGTAAAGGACGACGTCGATCGATTGTTTGAATGCTTCAAGTGCGGCGTTTCTCCTCCTCAATCTGCTGTGAGAGGAATAAAGAAAAGGAAAAGTAAATTGAAGCCCGAGTGTTCAGCAGACTTTGAGACTTCAGCTTCTGGATCGGTTAAGGAAAGGCAGGAAAGTGCATCGAGCGTCCGAGATACCGTGGAGAAAATTGGTTTGACAAGTAAAGAAAAAGGTTCTAGTTCTAAGAAGTTCTCTCCAATCGTATTTTATGGTTCGCCTAGAGGCGTCCCTCCAAAGAGGCCATCTAGTTTGTGGAGATTATTGCGGGAAATCCGTGTTGATCTTTCTGAGCAAAGCAAATTCAAGTTAAGCAAGCAAGTGTGGGCCACATTTCCCAGACAAGAAGAAGCAATTAAGTTTGCGAGAGAGCACACTGATGTTCATATTTTTAGTTATCAAGATCACTTTAATGGACAAAGGAGATTTCTAGTTTCATCTTACAGTGAGTTCTGGCATAGGTATAAAAGCATGGATTCAAAATGTCGCCACCATTATGAAGTGATTCAAGAGGGTGCTCCGTGTCACCTTTACTTCGATTTGGAATACAGTAAAAGAATCAACACGGGAAAAAATGGAGACGTAATGGTTGATTCCTTGATATCAGTTGTTCTGGAAGCCTTAAATGAAAAGTATTCAATTCAAGGCAGCTTTGACTGGATACTAGAGCTTGATTCCTCGAACGAAGAGAAGTTCTCTCGCCACCTGATAATCCGCATACCAAAAGTCGCCTTTAAGGATAACTCGCATGCAGGAGCATTTGTTGGTGAGATATGTTCACGGATTTGTAGTGCAAAAGTGGAAGGGAGATACGAAGAACTGTTTATTAAAAAGGATTCAAGCTCCACTGAATCTCCTAGCCATCTGTTTGTGGACAATGCAGTTTATTCTAGAAATCGTTGCTTTCGTTTAGCTTTGTCATCAAAGGCAGGAAAGACTTCCGTGCTTCTACCTACGGGGAGACATGCTCGTACAAAAATGTGTGAGGAAGACATGTTCATGGCATCCTTGATCTGCAACGTTGATGCTGACTGCGAGAAGTTTCTGGTTTGCAAAATGGATTTAGACTGCGTAAAGACATTGCAATTTGAGATGGAGGAGAAATGTAATTTTGGACGGCATTTCAGTTTCGCCAAAGAAGCACCGTTGACTGGTGGCATGAGAGATATTCCAGCAACTTCTTGCATGGGAAGATCTCCATTCCCAGCTGTGGATAACTTTGTTGAATCAGTTGCCTCCACTGGAAGTGTGGCAGGAAAAATACGCTGCTGGTACTGGTTCTCGGAATATGGACTAATAGTCTACAGCATGTCCCGTAATAGATACTGTGAACGAATTGGTCGAGAACACAAAAGCAACCATGTGATGTATGTTGTCGACCTTAGGAGGGCTGCCTATTATCAGAAGTGTCACGATCCAGATTGTAGAGGTTATCGATCTCCTCTGCGTCCAATCCCAATTGATGTCATTCCTAGTCCATGGGTTTCCACGGATTCAGAACAGATATCAAATGACATTGTGTCAACCGATGATTGCATCAAGTATCAATCTCTAACCAACGATGAAAATTGTCTTTTGCTTTTCAGTGATAAGAACATTACAGACAGCAGTGTCAAGGATTCCTGGTGGCTTGAAGTGACGAGGGTGGCAGACGATGTTGAAAACAAACGGAACATGGTCCTTGGAAAACTAGACTTCGAAGACGATGACTGGTGGATGGCTGTGGAAAACTCAGTACAAGATTTGTCTACTTGA 1812 42.6 MASTVKDDVDRLFECFKCGVSPPQSAVRGIKKRKSKLKPECSADFETSASGSVKERQESASSVRDTVEKIGLTSKEKGSSSKKFSPIVFYGSPRGVPPKRPSSLWRLLREIRVDLSEQSKFKLSKQVWATFPRQEEAIKFAREHTDVHIFSYQDHFNGQRRFLVSSYSEFWHRYKSMDSKCRHHYEVIQEGAPCHLYFDLEYSKRINTGKNGDVMVDSLISVVLEALNEKYSIQGSFDWILELDSSNEEKFSRHLIIRIPKVAFKDNSHAGAFVGEICSRICSAKVEGRYEELFIKKDSSSTESPSHLFVDNAVYSRNRCFRLALSSKAGKTSVLLPTGRHARTKMCEEDMFMASLICNVDADCEKFLVCKMDLDCVKTLQFEMEEKCNFGRHFSFAKEAPLTGGMRDIPATSCMGRSPFPAVDNFVESVASTGSVAGKIRCWYWFSEYGLIVYSMSRNRYCERIGREHKSNHVMYVVDLRRAAYYQKCHDPDCRGYRSPLRPIPIDVIPSPWVSTDSEQISNDIVSTDDCIKYQSLTNDENCLLLFSDKNITDSSVKDSWWLEVTRVADDVENKRNMVLGKLDFEDDDWWMAVENSVQDLST 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8818853 8826009 + ClG42_05g0099600.10 Clacu05g0996 248743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0996 603 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 20 578 IPR044917 GO:0003682(PANTHER)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0003896(PANTHER)|GO:0003896(InterPro)|GO:0005634(PANTHER)|GO:0005759(PANTHER)|GO:0006264(PANTHER)|GO:0009411(PANTHER)|GO:0019985(PANTHER)|GO:0031297(PANTHER)|GO:0042276(InterPro)
Clacu05g0996 603 MobiDBLite consensus disorder prediction 22 66 - -
Clacu05g0996 603 Pfam Herpesviridae UL52/UL70 DNA primase 445 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0996 K22761 - - csv:101209857 1124.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g781 . . Bda05g00095 . Bpe03g00261 . Bma10g01257 . Cmo16g00102 . . . . . . . . Bhi01g01413 . . . . . . . . . . . . . Cone1ag1196 . . . Lsi05g01187 . . . Blo07g00371 . . . . . . . . . . Cma16g00095 . Car16g00085 . . . . . . . . . . Cla05g00920 Cam05g1008 Cec05g1012 Cco05g1008 Clacu05g0996 . . . Csa03g01753 Chy06g00982 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009435 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 33