Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1004 ATGAGTGAAAGTGTGATCATTGGACAGTCGATGCTGACCACCGATATTTCAATGTTTGTCGATTTTGACAAAATATGTGCCTTTTATCATTTATCACGACTTCAAGTCAATCAAATTCTTTCAGAAGGCCCGATCTTTCTCCCTCCCCTCCAGAACCCTCCACATTCTTCCGACGCTCCAAGTTCCTCTTTCATGGCGTCCGATCTCGAATCCAAGGCTAAGGAAGCATTTATCGACGACCACTTCGAACTTTCCGTCGACCTCTACACTCAGGCCATCGCTCTTAGTCCGAAGAAATCCGAGCTTTATGTTGACCGCGCTCAGGCCAACATCAAACTGGGTCATTACACTGAGGCTGTTGCTGATGCTAGCAAAGCAATTGAACTTGACCCTTCAAATTCAAAAGCATATTTGCGTAAAGGCACTGCATGTCTGAAACTTGAGGAGTATCAAACGGCAAAGGTTGCGTTGGAGACAGGCTCTGCTTTGGCCCCAGGAGATTCAAGATTCACGAATTTAATAAAAGAATGTGAAAAACTCATTGCTGAGGAAATGGGCAATCTTACACAGGAATCTGTGGAAAATACTGTTCAGGAGACTGTTTTACCAATTAATGACATTGTACCCGTGAGTGATCAACCGCATCAAGCGACTAGAGAAGTCAAACCGAAATTCAGGCACGAATTTTATCAGAAACCGGAAGAAGTAGTTGTGACCATATTTGCTAAGGGAATACCAGCTGAAAATGTTGCTGTTGAATTTGGCGAACAAATTCTAAGTGTGACTATTGATCTTCCTGACGAAGATGCATATCGTTTCCAGACTCGTTTATTTGGGAAGATAATACGCGAGAAGTGCAAATTTTTTGTTTTATCAACAAAAATTGAAATTCGTCTTGCAAAGGCTGAGCAAATACACTGGACATCTCTTGAATTCTGCAAGGAGAATAGTATTACCCAGAGCATTGTCTCCGCCAGTGGATCTCAGAGGCCCTCTTACCCCTCCTCTAAGCCAAGAAGAGATTGGGATAAGATTGAAGCTCAAGTGAAAAAAGAGGAGAAAGACGAAAAACTAGATGGGGATGCAGCGTTGAACAAGTTTTTCCGAGACATATACAAGGATGCTGATGAGGATACAAGAAGGGCCATGCAAAAATCATTCGTGGAATCAAATGGCACGGTCCTGTCGACGAACTGGAAGGAGGTGGGATCAAAGAAGGTTGAAGGTAGCCCTCCAGATGGTATGGAGTTGAAGAAATGGGAGATCTGA 1269 43.26 MSESVIIGQSMLTTDISMFVDFDKICAFYHLSRLQVNQILSEGPIFLPPLQNPPHSSDAPSSSFMASDLESKAKEAFIDDHFELSVDLYTQAIALSPKKSELYVDRAQANIKLGHYTEAVADASKAIELDPSNSKAYLRKGTACLKLEEYQTAKVALETGSALAPGDSRFTNLIKECEKLIAEEMGNLTQESVENTVQETVLPINDIVPVSDQPHQATREVKPKFRHEFYQKPEEVVVTIFAKGIPAENVAVEFGEQILSVTIDLPDEDAYRFQTRLFGKIIREKCKFFVLSTKIEIRLAKAEQIHWTSLEFCKENSITQSIVSASGSQRPSYPSSKPRRDWDKIEAQVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEI 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8867688 8871776 + ClG42_05g0100400.10 Clacu05g1004 248751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1004 422 FunFam Protein SGT1 homolog A 220 323 - -
Clacu05g1004 422 SUPERFAMILY TPR-like 68 178 IPR011990 GO:0005515(InterPro)
Clacu05g1004 422 Pfam SGS domain 340 420 IPR007699 -
Clacu05g1004 422 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515(InterPro)
Clacu05g1004 422 Gene3D Tetratricopeptide repeat domain 61 201 IPR011990 GO:0005515(InterPro)
Clacu05g1004 422 ProSiteProfiles CS domain profile. 222 311 IPR007052 -
Clacu05g1004 422 SMART tpr_5 134 167 IPR019734 GO:0005515(InterPro)
Clacu05g1004 422 SMART tpr_5 66 99 IPR019734 GO:0005515(InterPro)
Clacu05g1004 422 SMART tpr_5 100 133 IPR019734 GO:0005515(InterPro)
Clacu05g1004 422 FunFam Protein SGT1 homolog 65 198 - -
Clacu05g1004 422 Gene3D - 223 313 IPR008978 -
Clacu05g1004 422 ProSiteProfiles SGS domain profile. 332 422 IPR007699 -
Clacu05g1004 422 Pfam Tetratricopeptide repeat 113 174 - -
Clacu05g1004 422 PANTHER PROTEIN SGT1 HOMOLOG 69 420 IPR044563 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0050832(PANTHER)|GO:0051087(InterPro)
Clacu05g1004 422 SUPERFAMILY HSP20-like chaperones 217 312 IPR008978 -
Clacu05g1004 422 Pfam CS domain 226 301 IPR007052 -
Clacu05g1004 422 CDD p23_CS_SGT1_like 228 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1004 K12795 - - csv:101208950 634.409
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g790 . . Bda05g00098 Bda07g01908 Bpe03g00160 . Bma10g01265 Bma14g02037 Cmo16g00095 Cmo18g01311 . . . . Sed07g0976 . Cpe14g00075 Bhi01g01421 Tan01g0179 Cmetu06g2016 . Hepe07g0111 Mch10g0114 . . . . . . . . Cone1ag1200 Cone5ag0900 . . Lsi05g01180 . . . Blo07g00360 Blo09g00053 . . . . . . . . . Cma16g00091 Cma18g01280 . Car18g01194 Cpe09g00058 . . . . . . . . Cla05g00928 Cam05g1015 Cec05g1019 Cco05g1015 Clacu05g1004 Cmu05g0957 Cre05g1038 . Csa03g01760 Chy06g00988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005199 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 2 1 40