Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1015 ATGACGCCTTATAACTCCAAAACTCCATTCATATTTAACGTCACTTCTTCCTCTTCTTCCTCCCTTCACTCGATACAAACAACCCCACAGTACACAGGACTCTGGACTTCCTCTCAAAGCTTTAACCTTTTACACCATTTTCCCCATTTGGGTCTACCAAAAAGGTCCAACTTTTCGCTTGTGATAAGGGTTGTATGGAAGCTTGAAGCGAAGGGTCTGAATTGTCATATCTCTTTGAGAGACAAGAAAGAGGAGGGGAATGGAGGCCATATGGAGTGTGTTCTGTGGAGTCAAGCTCTGATCATCTGTTTTGATTTTCTACTGTTCATCTTGCTTGTATCCAATATTGTGGGGAAGTCAATGAAAAGAGTTCACATGTCGAATCGAATTCGTAACGGTTCAGGTTTGCTGATTTTTTCTGCTATCTTCAATGGCTGTGTTGGATTGGTGTACCTTGGCTTAGGCATTTGGACTTTGGTGGAGAAGTTGAGGAAAGATCACACTGCTTTGCCTTTGCAGCTGTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTGTTGGTGAGTTCTATTGTCAGCATATGGAGTAAACAGCTTCCAAGAGCCTTGTTGCGCCTATTGTCCATTGCGGCATTCGTGTTTGCTGGGGTTGTTTGTGTTCTTTCACTTTTTGATGCCGTTTCGAGTAAAATAGTATCGGCAAAGATGGTTTTGGATGTTCTATCTGTTCTGGGATCAGTTTTATTATTGCTTTGCTCTTTTGGTTGTTTTAGCTGCCAAGAGAGTGAGGAGAGTATCAATGGGAATGGACTTTACACCCCATTAATTGATGAGGCCAATGAAAGTGGTAAGCTTGATCCTGTAACTCCATTAGCCAAAGCTGGATTGCTGAGTAAAATTTCGTTTTGGTGGATGAATCCTTTAATGAAAAGGGGGAAGAAGAAGACTCTCAACAGTGAAGATATACCGATGATGCGTGAGGAAGATCGAGCAGAAAGTTGTTACTTACAGTTCATAAACCAAATGAACGAGCACAAAAGAAAAGACCAAAGTTCTCAATCATCAGTCTTCAGAGTCATTCTTTCATGCCATCGGAGGGATATATTATTGTCAGGATTTTTCGCTTTGTTGAAAATACTCTTTCTCTCTGCTGGTCCTCTGCTTCTTAATGCCTTCATTTTGGTTGCTCAGGGACACCAAAGTTTCAAATACGAAGGTCTTGTGCTTGCCATTTCACTTTTCTTTTCAAAAAGCATTGAATCCATATCACAAAGACAATGGTATTTCAGAACCAGGCTTGTTGGTCTTAAAGTCAGGTCTTTGCTCTCAGCAGCCATTTATAAGAAGCAATTGCGATTGTCCAGTGAAGCTAAGTTGATGCACTCGAGTGGTGAAATCATGAACTACGTTACCGTAGACGCGTATAGGATTGGAGAATTCTCATTCTGGTTCCACCAAACTTGGACCACAAGCGTTCAGCTTTGTATTGCACTTTTGATCCTCTACAAAGCAGTGGGAATAGCAACCATAGCCTCCTTATTAGTGATAATTCTATGTGTAGTTGGGAATACTCCAATTGCCAAGCTACAACATAAGTATCAGAGTAAATTGATGGCGGCACAAGATGAGAGATTGAAGACGTTTACAGAGGCCCTTGTAAACATGAAAGTGTTGAAGTTATATGCGTGGGAAACTCATTTCAAGAATGTAATTGAGAAGTTAAGAAAGGAGGAGCAGAGGTGGCTGTCAGCCGTGCAATTTCGAAAGGGATACAATGGCATTCTCTTTTGGTCGTCTCCTGTTATCGTCTCTGTTGCAACCTTCGGGGCATGTAGTTTTTTGAACATTCCCCTACATGCCAATAATGTCTTCACTTTCGTATCTGCATTGCGTCTTGTTCAAGAACCTGTCAGATCTATGGGTGATGTCGTTGCGGTGATCATTCAAGCAAGGGTCTCATTTACACGTATTATTAACTTTCTGGAGGCACCTGAGCTGCAAACTTCAAGTGTTCCTAGAAAGTGTGTGAAGATGAATAACGACTGCTCCATTCGGATCCGTTCAGCATCTTTCTCGTGGGAAGAGAATTCGACAAGGCCTACTCTTCGTGATATAAATCTAGAGGTCAAGCCAGGTTCAAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCAGCCGTTCTTGGTGAAATTCCAAATGTTGAGGGAAATATTCAAGTTTATGGAAGGATTGCTTATGTGTCTCAAACGGCATGGATCCAAACAGGGTCCATACGAGATAACATTTTATTTGGCTCTGAAATGGACAATTCGAGATATCGAGAAACACTCGAGAAGTGTTCATTGGTGAAGGACCTCGAGTTACTTCCTTATGGTGATCTCACTGAGATTGGTGAAAGAGGAGTAAATCTCAGTGGTGGACAAAAGCAGAGGATTCAACTTGCTCGTGCGCTATATCAAAATGCCGACATATATCTTTTGGACGATCCATTTAGCGCTGTCGATGCTCATACTGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCACTCTCGGGAAAAATGGTTCTTCTTGTGACTCATCAAGTCGATTTCCTGCCAGCTTTTGATTCTGTCCTGCTGATGTCTGATGGGGAAATTCTAAAAGCAGCTCCTTATGATCAGCTGTTGGCACATAGTAAAGAATTTCAGGAACTTGTCAATGCACACAAAGAGACTGCTGGAACTGAAAGGCTTGCAGATATATCTGCTACCAAGAGTTTGAGAACATCTAGTAAAGAAATTAAGAAATCTTTTACAGAGAAACTGTCTGTAGCTTCTGATGCTAATCAGATAATTAAGCAGGAGGAGCGAGAAGTTGGAGACTCAGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTCTTCTTCTCCTTAGATGTTTTCTCCCAATTAGCATTTGTGGCATGTGGAATAACTCAAAACTCTTGGATGGCTTCGAACGTCGATAATCCCAACATCAGCAACTCGCACTTGATCATAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTTTTGGCTTCAAGATCTCTTTTAACAGCTGTTTTAGGTCTGCAATCATCAAAATCATTGTTTTCTCAGCTACTAACATCTCTTTTTCGTGCACCGATGTCCTTCTATGACTCCACGCCTCTTGGAAGGATACTTAGTCGGGTCTCAATGGATCTTAGTATTGTGGATCTTGATGTCCCGTTTAGTTTGATATTTGCTGTGGGGGCAACCTCCAATGCCTATGCTGCTCTCGGAGTTTTAGCTGTAATCACGTGGCAAGTTCTATTCATCTCCATACCGACAATCATTTTGGCAGTTTGCTTGCAGAGATACTATTTCGCTTCTGCTAAAGAACTCATGCGTCTTAATGGGACAACAAAGTCAATGGTAGCGAACCATTTGTCCGAATCCATAGCTGGAGCAATGACAATTCGAGCTTTTGAAGAGGAAGAGCGATTCTTTAAGAAAAATCTTGAGTTTGTTGATGGAAATGCTAGTCCTTTCTTTCACAACTTTTCAGCCAATGAGTGGCTGATACAGCGGTTAGAAATGCTCAGCGCGGTTGTCCTTGCCTCCGCTGCATTTTGCATAGTATTGCTACCAACTGGAAGCTTCAGCCCTGGTTTCATTGGAATGGCACTCTCTTATGGCCTTTCTTTAAATGTGTCCCTGGTCTTCTCCATCCAGAATCAATGTAATATAGCCAATCACATTATTTCTGTAGAAAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCTGAAATCATCGAAGCTAACCGTCCCCCGACCAACTGGCCCTCTATTGGCAAAGTGGAGATAATTGACTTGAAGATTCGGTATAGACCAAATACACCCCTTGTTCTTCATGGTATTAGCTGCACATTTGAAGGAGGACATAAGATTGGTATTGTTGGTCGGACTGGCAGTGGGAAATCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCAGGAGGAAAGATTTTAGTTGATGATATCGACATCTGCTCGATTGGACTTCATGACCTGCGTTCACGTTTTGGAATTATACCTCAAGATCCAACCCTTTTTAAAGGGTCTGTTCGATACAATTTGGATCCCTTAGTCCAGCATACCGATGATGAAATATGGGAGGTACTCGGAAAGTGTCAACTTAGAGAGGTTGTCGAAGAGAGAGAGGCGGGATTGGATTCCTTGGTTGTGGAAGATGGTTCAAACTGGAGCATGGGACAGCGACAACTTTTCTGTTTAGGTCGTGCACTTTTGAGGAGAAGTCGAATATTAGTGCTTGACGAAGCAACTGCATCAATCGACAATGCCACCGATATGATTCTGCAGAAAACTATTCGATCTGAATTCGCAGACTGTACTGTAATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATAAGTGATGGGAGAATAGCAGAATACGACGAACCGACCACATTGATCAAGAGAGAAGGCTCCCTATTTGGACAGTTAGTCAAAGAATACTGGTCTCACTCACCATCTGCAGGATTATTTTGA 4620 41.9 MTPYNSKTPFIFNVTSSSSSSLHSIQTTPQYTGLWTSSQSFNLLHHFPHLGLPKRSNFSLVIRVVWKLEAKGLNCHISLRDKKEEGNGGHMECVLWSQALIICFDFLLFILLVSNIVGKSMKRVHMSNRIRNGSGLLIFSAIFNGCVGLVYLGLGIWTLVEKLRKDHTALPLQLWLSASFHGFTWLLVSSIVSIWSKQLPRALLRLLSIAAFVFAGVVCVLSLFDAVSSKIVSAKMVLDVLSVLGSVLLLLCSFGCFSCQESEESINGNGLYTPLIDEANESGKLDPVTPLAKAGLLSKISFWWMNPLMKRGKKKTLNSEDIPMMREEDRAESCYLQFINQMNEHKRKDQSSQSSVFRVILSCHRRDILLSGFFALLKILFLSAGPLLLNAFILVAQGHQSFKYEGLVLAISLFFSKSIESISQRQWYFRTRLVGLKVRSLLSAAIYKKQLRLSSEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSVQLCIALLILYKAVGIATIASLLVIILCVVGNTPIAKLQHKYQSKLMAAQDERLKTFTEALVNMKVLKLYAWETHFKNVIEKLRKEEQRWLSAVQFRKGYNGILFWSSPVIVSVATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVVAVIIQARVSFTRIINFLEAPELQTSSVPRKCVKMNNDCSIRIRSASFSWEENSTRPTLRDINLEVKPGSKVAICGEVGSGKSTLLAAVLGEIPNVEGNIQVYGRIAYVSQTAWIQTGSIRDNILFGSEMDNSRYRETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVMEALSGKMVLLVTHQVDFLPAFDSVLLMSDGEILKAAPYDQLLAHSKEFQELVNAHKETAGTERLADISATKSLRTSSKEIKKSFTEKLSVASDANQIIKQEEREVGDSGFKPYIQYLNQNKGFFFFSLDVFSQLAFVACGITQNSWMASNVDNPNISNSHLIIVYLLIGVTSTLFLASRSLLTAVLGLQSSKSLFSQLLTSLFRAPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAVGATSNAYAALGVLAVITWQVLFISIPTIILAVCLQRYYFASAKELMRLNGTTKSMVANHLSESIAGAMTIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFIGMALSYGLSLNVSLVFSIQNQCNIANHIISVERLNQYMHLSSEAPEIIEANRPPTNWPSIGKVEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDDIDICSIGLHDLRSRFGIIPQDPTLFKGSVRYNLDPLVQHTDDEIWEVLGKCQLREVVEEREAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPTTLIKREGSLFGQLVKEYWSHSPSAGLF 1539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8962415 8969457 - ClG42_05g0101500.10 Clacu05g1015 248762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1015 1539 FunFam ABC transporter C family member 3 1276 1528 - -
Clacu05g1015 1539 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 684 907 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g1015 1539 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1014 1256 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu05g1015 1539 CDD ABC_6TM_ABCC_D1 370 657 IPR044746 GO:0140359(InterPro)
Clacu05g1015 1539 Gene3D - 1277 1528 IPR027417 -
Clacu05g1015 1539 CDD ABCC_MRP_domain1 684 884 - -
Clacu05g1015 1539 Gene3D ABC transporter type 1, transmembrane domain 339 662 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu05g1015 1539 Gene3D ABC transporter type 1, transmembrane domain 943 1274 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu05g1015 1539 FunFam ABC transporter C family member 10 352 665 - -
Clacu05g1015 1539 SMART AAA_5 1319 1511 IPR003593 GO:0016887(InterPro)
Clacu05g1015 1539 SMART AAA_5 711 884 IPR003593 GO:0016887(InterPro)
Clacu05g1015 1539 Gene3D - 663 929 IPR027417 -
Clacu05g1015 1539 CDD ABC_6TM_ABCC_D2 975 1268 IPR044726 GO:0140359(InterPro)
Clacu05g1015 1539 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 369 649 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu05g1015 1539 SUPERFAMILY ABC transporter transmembrane region 361 665 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu05g1015 1539 FunFam ABC transporter C family member 5 943 1274 - -
Clacu05g1015 1539 ProSitePatterns ABC transporters family signature. 809 823 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g1015 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1284 1520 IPR027417 -
Clacu05g1015 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 907 IPR027417 -
Clacu05g1015 1539 CDD ABCC_MRP_domain2 1291 1511 - -
Clacu05g1015 1539 Pfam ABC transporter 1310 1458 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g1015 1539 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1293 1527 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g1015 1539 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 272 1528 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Clacu05g1015 1539 FunFam ABC transporter C family member 10 668 920 - -
Clacu05g1015 1539 SUPERFAMILY ABC transporter transmembrane region 981 1276 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu05g1015 1539 Pfam ABC transporter transmembrane region 979 1236 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu05g1015 1539 Pfam ABC transporter transmembrane region 369 636 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu05g1015 1539 Pfam ABC transporter 702 836 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1015 K05666 - - csv:101210136 2602.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1015 Clacu-Chr5:8962415 Clacu09g0059 Clacu-Chr9:598598 0.00E+00 dispersed
Clacu05g1015 Clacu-Chr5:8962415 Clacu09g0584 Clacu-Chr9:5002932 5.70E-277 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48