Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1017 ATGATGAAGAATAGCTTCATTTTCCTTGAAATATTATTGTTTTTAGCATTCATCTGGCCGGGGGTTTTCACTGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAATCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCCAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGTGGCCCGATCCCTGCGAATACTCTTAGCCGCCTAACTGCGCTCGAGATTCTAAGCCTTAGGTTGAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCAAAGCTGGAAAGTTTGAATTCCTTGTATCTGCAATACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAGTTTGGAATAACCTCAGTGTCATTGATCTATCGAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTTTGAATCTTGCAAACAACTCATTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCCGGTAACAATGTTACTCAAGAACATAGTGCAATTCCCCCATCTTTTCCTCTCCAGCCTCCCACTGCTCAACCGACAGGAAAAGGCAAAGGACTGAGTCAATCTGCAATACTTGGTATTGCAATTGGTAGTTCAGTTATTGGGTTTATTTTGCTAGCTGTTTTGTTGACTGCTTGCTGGTTGAAAAAACGAAAGGAAAATATGAGTTCCCCCATGGAGCCCAAAAAGAAGGAAGCGTCTGTGAAGAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGCTACAAAGCAGCTTTGGAAGACTCAATGACTGTTGTAGTGAAGAGGCTGAATCAAGTGACGACGGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAACGTTGTTTCCTTAAGAGCATACTATTATTCAAAGGACGAGAAACTCATGGTCTATGACTACTATGAACAAGGGAGTGTGTCTGCAATGTTACATGGTAAGGAAGGAGATGGTTTACATGTGTTAGATTGGGATACTCGGATGAAAATTGCTATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCCCATGGAAACGTCAGAGCTTCAAACATTTTCCTCAACTCTAAAGGATATGGTTGTGTATCCGACGTTGGCTTGGCTGCGTTGATGAATTCAATTCTACTACCAGCCACAAGAACCCCAGGTTACCGAGCGCCTGAATTGACCGACACTCGAAGAGTATCACACGCAGCTGATGTCTACAGTTTCGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCTCCCATACATGTAGAAGGTTGTAATGAAGTTGTTAATTTGGTGAAGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAGATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGCAAAGGCCAAAAATGACAGATATAATGTCGAGAATCGAGCAAGTTCGACAACACAGTACAGGAACCCAACCGTCATCGGGGTCAAAATCAGCGTATTCAACTCCCGTTCATGGTCCCACAAGCAGAAACGGTTCTATAAAATTCATTCCGCACCAAATCACCATTAGTTTTCCATCTCCTTCGTCGTTTCTCATCCTCATCCTCTCTTCGTCTTCTTCACAACAAACCCTCACACCAGACCTAAAGCGCCTTCACGAGAACCTCTCTCTTGATTTTTCTTAG 2034 43.17 MMKNSFIFLEILLFLAFIWPGVFTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKSWTGVFCNSDESRVVALRLPGTGLRGPIPANTLSRLTALEILSLRLNRISGPFPFDFSKLESLNSLYLQYNKFSGPLPLDFSVWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTQEHSAIPPSFPLQPPTAQPTGKGKGLSQSAILGIAIGSSVIGFILLAVLLTACWLKKRKENMSSPMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSMTVVVKRLNQVTTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYEQGSVSAMLHGKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLAALMNSILLPATRTPGYRAPELTDTRRVSHAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVKWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMTDIMSRIEQVRQHSTGTQPSSGSKSAYSTPVHGPTSRNGSIKFIPHQITISFPSPSSFLILILSSSSSQQTLTPDLKRLHENLSLDFS 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8995384 8999702 + ClG42_05g0101700.10 Clacu05g1017 248764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1017 677 FunFam pollen receptor-like kinase 1 296 402 - -
Clacu05g1017 677 MobiDBLite consensus disorder prediction 599 623 - -
Clacu05g1017 677 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 403 610 - -
Clacu05g1017 677 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Clacu05g1017 677 ProSiteProfiles Protein kinase domain profile. 327 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1017 677 Pfam Protein tyrosine and serine/threonine kinase 331 595 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1017 677 SUPERFAMILY Protein kinase-like (PK-like) 331 596 IPR011009 -
Clacu05g1017 677 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Clacu05g1017 677 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Clacu05g1017 677 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Clacu05g1017 677 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Clacu05g1017 677 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Clacu05g1017 677 PANTHER OS05G0588300 PROTEIN 10 613 IPR050994 -
Clacu05g1017 677 Gene3D Ribonuclease Inhibitor 27 234 IPR032675 -
Clacu05g1017 677 Gene3D Transferase(Phosphotransferase) domain 1 403 617 - -
Clacu05g1017 677 FunFam Probable inactive receptor kinase RLK902 26 185 - -
Clacu05g1017 677 SUPERFAMILY L domain-like 38 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1017 Clacu-Chr5:8995384 Clacu11g0407 Clacu-Chr11:3813284 1.50E-120 dispersed
Clacu01g0066 Clacu-Chr1:593546 Clacu05g1017 Clacu-Chr5:8995384 1.60E-156 wgd
Clacu01g0206 Clacu-Chr1:2017868 Clacu05g1017 Clacu-Chr5:8995384 1.50E-167 wgd
Clacu05g1017 Clacu-Chr5:8995384 Clacu07g1485 Clacu-Chr7:29434394 1.20E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73565 PF07714 PK_Tyr_Ser-Thr 1.30E-34 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1017 - - - 0.0