Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1030 ATGGAGAATTTTGTGGAACGGAATCAAAACAAGCTCAAAAATGAGCTGCTTAAAGGCAAGGAATTAGCAAAGCAACTCCAAATTCATCTCAATATGAGACCATCCGCATCATCCACGGCTGCTTCTTCTTCTTCTTCTTCTTCATTTTCAAATGATAATGGTGGTGAATTATTAGTTCAAAAGATTTTATGTTCATATGAAAAGGCACTGTCTTTGCTCAACTCAAATGGAATCCAAATATCTGAATCTCCTTCATCTATTAATGGAGGAAGTCCAAGGAGTGAAGACTCTGACCGTGAATTCAAGGACCTATTTGATCAAACAAATGCTAATTCTTCCCGCAGAAGGAACATTCTTCCAATTTGGACACAGAAATTCCAAGTTAGTCCAGGGATGGCCCTTGAAGGCTCTCTTGATGATGGCTTCTGCTGGAGGAAATATGGTCAGAAAGGCATTCTTGGTGCCAAACATCCAAGGGGGTACTATAGATGTACATACAGGAACCTCCAAGGTTGTCTTGCAACCAAACAAGTTCAACGGTCCGATGACGATCCGACTGTCTTTGAAATCACGTACCGAGGAAAGCATAGTTGCAGCCAAGTTTCCAATCTTAGTACTCCATCTACAACGACACCAAAGTTTCAGCAACAAAACCAACAAACATCACCTGATGCTCTCTTGAACTCATGGGCATCCTTAAGAGTCATAACTCAAAACCTTGACACAACAATTCATGAAACCCCAACATTGTCATTTCATTACGACGCGGCAGACCGTGTCGAAACGTCGACTGGGGACGTCAACTTTGCCGAGTTTTCTCCATGTTCTTCATTTATGTCTCCAACAACATCTGGTTCTGGGTTGAGCTATTGGTCTGCCTCATCAAGTGGGTTGAGTGAAGGATTTGTTGGGAATCAGAAGTTGGATTTGCAACCAAACAAATGTGAGATTTTTTCGTCACCAACTTCAGCTTTGGACTCTGAAACTCCTGCCTTAGACTTCCCATTTGGTGACCTTCAATTGGACCCAACTTTCACATTTGACGACACCAATTTCTTCTCCTAA 1065 41.97 MENFVERNQNKLKNELLKGKELAKQLQIHLNMRPSASSTAASSSSSSSFSNDNGGELLVQKILCSYEKALSLLNSNGIQISESPSSINGGSPRSEDSDREFKDLFDQTNANSSRRRNILPIWTQKFQVSPGMALEGSLDDGFCWRKYGQKGILGAKHPRGYYRCTYRNLQGCLATKQVQRSDDDPTVFEITYRGKHSCSQVSNLSTPSTTTPKFQQQNQQTSPDALLNSWASLRVITQNLDTTIHETPTLSFHYDAADRVETSTGDVNFAEFSPCSSFMSPTTSGSGLSYWSASSSGLSEGFVGNQKLDLQPNKCEIFSSPTSALDSETPALDFPFGDLQLDPTFTFDDTNFFS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9123607 9124992 - ClG42_05g0103000.10 Clacu05g1030 248777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1030 354 FunFam WRKY transcription factor 53 124 201 - -
Clacu05g1030 354 SUPERFAMILY WRKY DNA-binding domain 137 200 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1030 354 Gene3D WRKY domain 132 200 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1030 354 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 224 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu05g1030 354 MobiDBLite consensus disorder prediction 33 52 - -
Clacu05g1030 354 SMART WRKY_cls 138 200 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1030 354 MobiDBLite consensus disorder prediction 201 220 - -
Clacu05g1030 354 Pfam WRKY DNA -binding domain 139 198 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1030 354 ProSiteProfiles WRKY domain profile. 133 197 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1030 Clacu-Chr5:9123607 Clacu09g0946 Clacu-Chr9:8837497 3.70E-30 dispersed
Clacu07g0536 Clacu-Chr7:6940724 Clacu05g1030 Clacu-Chr5:9123607 1.90E-20 transposed
Clacu05g0107 Clacu-Chr5:1123831 Clacu05g1030 Clacu-Chr5:9123607 1.60E-35 wgd
Clacu05g1030 Clacu-Chr5:9123607 Clacu07g1507 Clacu-Chr7:29654990 1.50E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47668 PF03106 WRKY 1.70E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1030 - - - 0.0