Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1034 ATGTTGCCACCTGGCTTCTCCTCTTCGGTGCCAATGCTTCGTAAAGCCACCATTTTCTCTCTCTTTCCTCATATTTCTCTCTCCCTCTCTCTTGTTTATCTCCTTTTTCTTTTCCTCTGGTTTGCATCTTTTGATTACTGTAATGATTGTGATTGTGCAGCTGTTGGCTTAGATGGAATAATCAATAGACGGGTCCAAATCAACAATATCTGGAGTAGTTTGCCTTCCAATCTTGGATTTGTTCACACCTGGAAGCGTGAATATAGAACAAGTCTCATGATGATGGTAGATACGGGTGCATCGGAAAATCGTGGGCCGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATACAAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTCGATGGTCAAACCGTCTGCCTTTTTGGCATCTTTGATGGTCACGGTGGATCACGAGCTGCAGAGTTTTTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCAAAATTTTTGATGGATACCAAATTAGCTATCAGTGAAACATATCAACAGACGGATGCTGAATTTTTAAATTCGGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTGGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTACTATTATATCAAAGGGGGGTGAAGCGATCCCTCTTTCCGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGTTGCTTGTTCTCGCAAGTGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCAGGGAAGGAAGATGAACCAGAGGCAGCTGCTCGGAAGCTAACTGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATTGTGGTGAAGTTTCATCATGACAATGCAGGTCCTGCTGCAGATACTCGAGAAAACAACTAA 1185 44.47 MLPPGFSSSVPMLRKATIFSLFPHISLSLSLVYLLFLFLWFASFDYCNDCDCAAVGLDGIINRRVQINNIWSSLPSNLGFVHTWKREYRTSLMMMVDTGASENRGPVVDKHPEKDEDGGYTSGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEDEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAADTRENN 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9160188 9165066 - ClG42_05g0103400.10 Clacu05g1034 248781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1034 394 CDD PP2Cc 135 379 IPR001932 -
Clacu05g1034 394 SMART PP2C_SIG_2 131 379 IPR001932 -
Clacu05g1034 394 SMART PP2C_4 123 377 IPR001932 -
Clacu05g1034 394 PANTHER PROTEIN PHOSPHATASE 119 378 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu05g1034 394 ProSitePatterns PPM-type phosphatase domain signature. 164 172 IPR000222 GO:0043169(InterPro)
Clacu05g1034 394 Gene3D - 125 384 IPR036457 -
Clacu05g1034 394 SUPERFAMILY PP2C-like 129 380 IPR036457 -
Clacu05g1034 394 MobiDBLite consensus disorder prediction 103 122 - -
Clacu05g1034 394 ProSiteProfiles PPM-type phosphatase domain profile. 133 379 IPR001932 -
Clacu05g1034 394 MobiDBLite consensus disorder prediction 104 122 - -
Clacu05g1034 394 FunFam Probable protein phosphatase 2C 76 125 385 - -
Clacu05g1034 394 Pfam Protein phosphatase 2C 137 372 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1034 Clacu-Chr5:9160188 Clacu05g1756 Clacu-Chr5:26642957 6.90E-94 dispersed
Clacu05g1034 Clacu-Chr5:9160188 Clacu05g1042 Clacu-Chr5:9251315 7.30E-35 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1034 K17506 - csv:101203681 661.373