Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1036 ATGAATTCAGCTCTCCACAGAGGGTTGGATTCTAGTTTTGATGGAATTAGAAGAACTGAGAAGCTACTGAAATCTTCCTCTTCTAACAAACTCATGCCTGTAGGCTTGCCCTCAGAGAAGAAAATTCTTGATCCACAAGGGCCATTTCTTCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGATTTCTGTTTCGTTGGATCCTTTGTTCTTTTATGTTCCTTTTCGTACAGGATTTATTGGTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTAGTAGAAGATTCCTTGACAATAGCAACGAGGTATCTGTCATCATACTTTCTAATTGACATTTCTTCAGTCCTCCCACTTCCACAGGTGGTGATTCTGATAATGAGAGGTTCGAGATCCTTGAATACGAAGGACTTGCTGAAACATGCTGTATTATGTCAATTTGTGCCAAGCTTTCTTCGAATCTATCCACTGTACAAAGAAGTTACAAGGACCTCGGGCATACTCATTGAAACAGCCTGGGCAGGAGCTGCATTTAATCTCTTTCTCTACATGCTAGCTGGCCACCTGTTTGGGGCAAAATCTTACAAGTCCTTGCACATGGGAAAACTGCTTTGCCATTTTCGTTTGCGTCTCTGGCTTAGTGTTGTTCGCATCTCTCCTAGGCAACGTGCAG 673 42.35 MNSALHRGLDSSFDGIRRTEKLLKSSSSNKLMPVGLPSEKKILDPQGPFLQSWNKIFVLSCVISVSLDPLFFYVPFRTGFIGPSSRVFGRGVLVEDSLTIATRYLSSYFLIDISSVLPLPQVVILIMRGSRSLNTKDLLKHAVLCQFVPSFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYMLAGHLFGAKSYKSLHMGKLLCHFRLRLWLSVVRISPRQRA 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9178249 9186493 + ClG42_05g0103600.10 Clacu05g1036 248783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1036 224 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 76 - -
Clacu05g1036 224 SUPERFAMILY Voltage-gated potassium channels 44 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1036 Clacu-Chr5:9178249 Clacu10g1459 Clacu-Chr10:27746792 2.00E-42 dispersed
Clacu05g1036 Clacu-Chr5:9178249 Clacu05g1038 Clacu-Chr5:9202738 1.20E-23 proximal
Clacu01g0052 Clacu-Chr1:477478 Clacu05g1036 Clacu-Chr5:9178249 2.60E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1036 K05391 - csv:101214911 292.737