Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1042 ATGTGGTCCCCGCTACCCCTAGGTGGCCTCCATCCAAACACACTCATAAATCCAACGGCTCATATTCATTCTTCTTTTAAACTATCATTGAACTGCCACTTCAATCCTTTCTCATCATTTCCTTTCTTTTTCTCCCTCTTTTTCGTGCATTCACTGAACAAGCTGCAGCTCAGTAATAGCAGCCGGAACTTCCTCCGACGGCCGGTCGCTGGAATGTGCGATCCCACTACCATGATTAAAACCAAAAATGCTCGCCGGAGACGGCTGAGAGTTCGTAAACTGAGGTACAGATGGCAGAGGATGGTGCACGCGGCGGAGGAAGGTGAGGGCAATGAATTAAGTGATAATGGAGTTTCCAAATCGAATTGTGATCAAGTACTAGTCTCTGAGAAGGAATCGTCTTCGGCGTTGGACTGTCGAGTGTATAGCGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGACGATTAATGATGAGAAGTACAATTTCTTCGCCGTGTACGATGGACACGGCGGCGCTCAGGTGGCGCAGGTGTGCCGTGAACGGTTGCACCGGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGACGAAGTGAATAGCGGCGCCGCCACGATGAAGACGATCGGATCGGCGGTTGTTACGGCGGTGATCGGAAAGGAAGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGATGGTATTGCGTTGCCCTTGTCTAACGATCATAAGCCTGGTAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAATTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTCAAACCATTTGTTATCTCCAAACCAGAAGTGACTGTGACCAAGCGAACTGACAACGATGAGTTCCTCATATTAGGAAGTGATGGTCTGTGGGACGTTGTTTCGAATGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCGTTGAAGGTGGCGAACGACAGCCATGTCGCAGAAGCTGCAGCAGTGTTGGCGGAGCTCGCTGTGGCTCGTGGAAGCAAGGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAACCAAACCGTTGCTCTCCATGA 1251 49.88 MWSPLPLGGLHPNTLINPTAHIHSSFKLSLNCHFNPFSSFPFFFSLFFVHSLNKLQLSNSSRNFLRRPVAGMCDPTTMIKTKNARRRRLRVRKLRYRWQRMVHAAEEGEGNELSDNGVSKSNCDQVLVSEKESSSALDCRVYSEMSIIGRRKEMEDEVRVELGLTTINDEKYNFFAVYDGHGGAQVAQVCRERLHRIVAEEIVARGEMDEAEWGRLMERCFERMDDEVNSGAATMKTIGSAVVTAVIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNRCSP 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9251315 9253585 - ClG42_05g0104200.10 Clacu05g1042 248789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1042 416 SMART PP2C_4 126 406 IPR001932 -
Clacu05g1042 416 CDD PP2Cc 140 408 IPR001932 -
Clacu05g1042 416 PANTHER PROTEIN PHOSPHATASE 120 407 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu05g1042 416 Gene3D - 136 414 IPR036457 -
Clacu05g1042 416 ProSiteProfiles PPM-type phosphatase domain profile. 141 408 IPR001932 -
Clacu05g1042 416 Pfam Protein phosphatase 2C 143 401 IPR001932 -
Clacu05g1042 416 SUPERFAMILY PP2C-like 133 410 IPR036457 -
Clacu05g1042 416 ProSitePatterns PPM-type phosphatase domain signature. 174 182 IPR000222 GO:0043169(InterPro)
Clacu05g1042 416 FunFam Protein phosphatase 2C 50 161 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0119 Clacu-Chr3:1341008 Clacu05g1042 Clacu-Chr5:9251315 4.30E-67 dispersed
Clacu05g0899 Clacu-Chr5:7872997 Clacu05g1042 Clacu-Chr5:9251315 1.60E-64 dispersed
Clacu05g1042 Clacu-Chr5:9251315 Clacu07g1387 Clacu-Chr7:28696181 4.90E-58 dispersed
Clacu05g1034 Clacu-Chr5:9160188 Clacu05g1042 Clacu-Chr5:9251315 7.30E-35 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1042 K14497 - csv:101214188 593.193