Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1047 | ATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGATGTTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAGGAGTGCCTGATGCCCTCAGCTTGTAGGGTGTTTAAGGAGATGGAGGAGTCACCTGACCACGTGCCCCTCCACTATGACTTTGCCGTGTGTATGGGTGAAGCTAGGTCTTGTGGACGACCAACTGAACAGTTCATTCATGTTCCTATTCTTGCTTCAACTGCAGAGATTATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGACGGCCTGCTGAAAGAGGAGCCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTATACAACCAATATATTAATTCAAAATTTGGAGAGGCCATAGAGTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATCTCTCGGAAACTAAAGGTTTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGTTGGACTATTGGTTCAATTGAAGGATGGGAGAGCACTGGTCAAGAAAATGGTCATGATTCCGGTCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCGGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGAATACGCCTCTTCAATTGTTGGACAAAAAACATTTTGCGAAACTGTCTCGGCAACCTATTCAAAATGGGGCAGCTGCGGCATCACAAAACAATGAAAACTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGTGATCTTCTGGATGAGACAATCGCTCGAACCAAAGACAACATTGTTAAGAAGCAGGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAGGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTTAACGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGACCTGGAAGAAGAATACGAAGATAAGGAGGTTCGCAATCCTTCTACTATCAACATCCTCAATGCCGCTGCTAATTTGTGCTGTTCTGACCTGTGGCTGTATGACACTTCAAAATTCAAGGATGCATGGTTTTAA | 1740 | 44.43 | MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVDVYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKECLMPSACRVFKEMEESPDHVPLHYDFAVCMGEARSCGRPTEQFIHVPILASTAEIIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWESTGQENGHDSGPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKHFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEVRNPSTINILNAAANLCCSDLWLYDTSKFKDAWF | 579 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9310600 | 9319714 | + | ClG42_05g0104700.10 | Clacu05g1047 | 248794 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1047 | 579 | Pfam | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 181 | 228 | IPR031774 | - | |
| Clacu05g1047 | 579 | ProSiteProfiles | Zinc finger matrin-type profile. | 468 | 499 | IPR000690 | GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro) | |
| Clacu05g1047 | 579 | MobiDBLite | consensus disorder prediction | 417 | 436 | - | - | |
| Clacu05g1047 | 579 | Pfam | Replication stress response SDE2 C-terminal | 278 | 358 | IPR025086 | - | |
| Clacu05g1047 | 579 | Pfam | SF3a60/Prp9 C-terminal | 444 | 545 | IPR024598 | GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro) | |
| Clacu05g1047 | 579 | Coils | Coil | 407 | 434 | - | - | |
| Clacu05g1047 | 579 | PANTHER | SPLICING FACTOR SF3A-RELATED | 1 | 98 | IPR051421 | GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g1047 | Clacu-Chr5:9310600 | Clacu06g0122 | Clacu-Chr6:1328651 | 1.20E-09 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1047 | K12827 | - | csv:101205916 | 736.102 |