Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1051 ATGGGCTACGGCAGGCTCCACAAAACCGACCCCGGCGGCACTTCTTCCTCCGCCGCTGCCTTCCAACTCCCCGACCAACCCCTTTCATTTACCCCTCCCAACCCAAGGAGAACACGCCTTTTCCTTATTTCCCTTCTTTCTCTCCTTCTCATCGTCGCCGCCGCTGTCTCCGCCACCTTTCTCATCGGACTCCGAACTGCCTCCCCGGCTCGATCCGACCCCAACCTCCCTCGAAAACCAACTCAGGCTATTTCCAAGGCTTGTGGTCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGTTCTCTCAACGCCAACGAACAGGATCTCGTCCACATTTCCTTCAATATCACTCTCCAGCATCTCAACAAAGCGCTCTATTTGTCCTCTGAGATTTCCTCTCTTCAAATGGATCTTCGTGTTCGCTCCGCTTACGATGCTTGTCTCGAACTCCTTGACGACTCCGTTGATGCTCTCACACGTTCCTTGCAATCCGTCGCGCCTTCTTCCTCCTCCGGCACTCCGCAGCGCCTTGGCTCCTCTGAGGACGTCATTACCTGGCTTAGCGCCGCCCTTACCAATCAAGACACGTGTACGGATGGATTCTCTGAACTCTCCGGCTCGGTCAAAAACCAAATGGCTGATAAACTTCACAATTTGTCCGAACTTGTCAGTAATTGCTTGGCGCTGTTTTCCGGTAGTGAAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGGACACGACGAGGATAATTCCGGTAAATTCCCTGGGTGGATGAGTCGGAGAGAAAGGAGGTTACTGACGTTACCGGTGGGAGCGTTACAAGCCGATATTGTGGTTTCTCAGAACGGTAGCGGAACGGTGAAAACGATCGCCGAAGCGATCAAAAAGGCGCCGCAGTACAGTAATAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGAAAGAAAACGAACCTCATGTTTGTGGGGGATGGCAAGGGTAAAACTGTCATTTCGGGTGCTAAAAGTGTCTTTGATAATGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGCGCCGGTATAATCTTGAGGGACATGACATTTGAGAATTGGGCTGGACCGGGGCGCCACCAGGCGGTTGCGCTTCGAGTTGGCGCCGATCATGCGGTGGTGTACCGCTGCAACATAATCGGGTATCAAGACACTCTGTACGTTCATTCAAACCGCCAATTTTACCGAGAATGCGACATCTACGGGACGGTGGATTTTATCTTCGGGAATGCGGCGGTGGTGTTTCAGAACTGCAGCATTTACGCTCGAAAGGCAATGGCGCTTCAAAAGAACACAATCACCGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCAATCCACGCCTGCCGGATTTTACCCGCCTCCGATCTAGCATCGTCTAACGGCACAAACCCGACGTATCTTGGCCGTCCGTGGAAATTATACTCCAGAGTCGTGTACATGTTATCGTATATCGGGAGCCACGTGCATCCTCGCGGTTGGTTGGAATGGAACGCGACATTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGGCCGGGGGGGGCGGTGGGCCAGAGGGTGACGTGGCCTGGGTATCGAGTCATAACGTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCTCAGTTCATTTACGGCTCCTCATGGTTGCCGTCCACCGGAGTTGCATTCCTCGGAGGGCTAAATGTGTAA 1815 53.0 MGYGRLHKTDPGGTSSSAAAFQLPDQPLSFTPPNPRRTRLFLISLLSLLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACGRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSSGTPQRLGSSEDVITWLSAALTNQDTCTDGFSELSGSVKNQMADKLHNLSELVSNCLALFSGSETSDFSGVPIQNKRRLMNAGHDEDNSGKFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSVFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILPASDLASSNGTNPTYLGRPWKLYSRVVYMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9395563 9398054 + ClG42_05g0105100.10 Clacu05g1051 248798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1051 604 Gene3D - 284 602 IPR012334 -
Clacu05g1051 604 CDD PMEI-like_3 87 237 - -
Clacu05g1051 604 PANTHER PECTINESTERASE 43 593 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu05g1051 604 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Clacu05g1051 604 NCBIfam pectinesterase inhibitor domain 57 236 IPR006501 GO:0004857(InterPro)
Clacu05g1051 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 237 IPR035513 -
Clacu05g1051 604 Pfam Plant invertase/pectin methylesterase inhibitor 83 235 IPR006501 GO:0004857(InterPro)
Clacu05g1051 604 Pfam Pectinesterase 290 587 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu05g1051 604 SUPERFAMILY Pectin lyase-like 286 600 IPR011050 -
Clacu05g1051 604 FunFam Pectinesterase 284 602 - -
Clacu05g1051 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Clacu05g1051 604 FunFam Pectinesterase 80 239 - -
Clacu05g1051 604 SMART PMEI_2 79 235 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1051 Clacu-Chr5:9395563 Clacu09g0555 Clacu-Chr9:4738639 3.00E-133 dispersed
Clacu01g0044 Clacu-Chr1:402410 Clacu05g1051 Clacu-Chr5:9395563 9.30E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1051 - - - 0.0