Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1054 | ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTTGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGGCGGTGGTGGCAGCGGTGGCAACTCCAACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTTCCTACTCCTAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATATAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGAACGCTATCTTTCAGGACAAAAGGTATACTTTATGAGTGGGGTTGTCTTCATTTCTGCAGATTTTTTGTTGTGGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACGGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGTCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTATGGTCTCGATGAAGACGAGATCCATCTGCACCACACTCTTCATCCTTATTCCCAATCTCTTCATCTTCCCGAGTTGTCCACATCGAAGCAACGTTATGGAAACAACAACAGCGCTGTGAGCGGCCCAACAGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAGTGCCCTGTGTGCACTAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACGAGAGTTCACAATCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAACTGCCTTGCAAGTATTATTCGTTGGGTTGCTCTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGGTTTGTGCAACTACAGACCCTATGGTTGCCCATATGCTGGTTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGCATGGCTCCAGTCTACATGGCCTTCCTGCGTTTCATGGGCGATGAGAATGAGGCGCGAACCTACAACTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATTATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGTGTCTGCATACCAAACTTTTGTAGCTAA | 3663 | 45.37 | MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSGGNSNSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENIIDAVIVDEESIGLDRPGSGAKILYGKGALERYLSGQKVYFMSGVVFISADFLLWLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLYGLDEDEIHLHHTLHPYSQSLHLPELSTSKQRYGNNNSAVSGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHEGLCNYRPYGCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYNYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNFCS | 1220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9435367 | 9452815 | - | ClG42_05g0105400.10 | Clacu05g1054 | 248801 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1054 | 1220 | ProSiteProfiles | Zinc finger SIAH-type profile. | 1012 | 1072 | IPR013010 | GO:0008270(InterPro) | |
| Clacu05g1054 | 1220 | FunFam | ATP-dependent Clp protease ATP-binding subunit ClpX | 437 | 536 | - | - | |
| Clacu05g1054 | 1220 | CDD | Sina | 1073 | 1201 | - | - | |
| Clacu05g1054 | 1220 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 959 | 994 | IPR049548 | - | |
| Clacu05g1054 | 1220 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 642 | 677 | IPR049548 | - | |
| Clacu05g1054 | 1220 | CDD | RING-HC_SIAHs | 957 | 995 | - | - | |
| Clacu05g1054 | 1220 | ProSiteProfiles | Zinc finger SIAH-type profile. | 695 | 755 | IPR013010 | GO:0008270(InterPro) | |
| Clacu05g1054 | 1220 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 751 | 883 | - | - | |
| Clacu05g1054 | 1220 | CDD | RING-HC_SIAHs | 640 | 678 | - | - | |
| Clacu05g1054 | 1220 | SMART | ClpB_D2_small_2 | 438 | 530 | IPR019489 | - | |
| Clacu05g1054 | 1220 | FunFam | CLP protease regulatory subunit CLPX3 mitochondrial | 158 | 436 | - | - | |
| Clacu05g1054 | 1220 | Pfam | Sina, TRAF-like domain | 1103 | 1200 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
| Clacu05g1054 | 1220 | Pfam | Sina, TRAF-like domain | 786 | 883 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
| Clacu05g1054 | 1220 | Pfam | AAA domain (Cdc48 subfamily) | 227 | 431 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Clacu05g1054 | 1220 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 164 | 523 | IPR027417 | - | |
| Clacu05g1054 | 1220 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 753 | 883 | IPR008974 | GO:0005515(InterPro) | |
| Clacu05g1054 | 1220 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1070 | 1200 | IPR008974 | GO:0005515(InterPro) | |
| Clacu05g1054 | 1220 | SMART | AAA_5 | 227 | 389 | IPR003593 | GO:0016887(InterPro) | |
| Clacu05g1054 | 1220 | CDD | Sina | 756 | 884 | - | - | |
| Clacu05g1054 | 1220 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 901 | 1010 | - | - | |
| Clacu05g1054 | 1220 | Gene3D | - | 160 | 436 | IPR027417 | - | |
| Clacu05g1054 | 1220 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 1011 | 1067 | - | - | |
| Clacu05g1054 | 1220 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 694 | 750 | - | - | |
| Clacu05g1054 | 1220 | CDD | RecA-like_ClpX | 165 | 435 | - | - | |
| Clacu05g1054 | 1220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1012 | 1067 | IPR013083 | - | |
| Clacu05g1054 | 1220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 695 | 750 | IPR013083 | - | |
| Clacu05g1054 | 1220 | MobiDBLite | consensus disorder prediction | 602 | 623 | - | - | |
| Clacu05g1054 | 1220 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 1068 | 1200 | - | - | |
| Clacu05g1054 | 1220 | MobiDBLite | consensus disorder prediction | 122 | 144 | - | - | |
| Clacu05g1054 | 1220 | Pfam | C-terminal, D2-small domain, of ClpB protein | 438 | 507 | IPR019489 | - | |
| Clacu05g1054 | 1220 | Gene3D | - | 437 | 534 | - | - | |
| Clacu05g1054 | 1220 | NCBIfam | ATP-dependent protease ATP-binding subunit ClpX | 163 | 525 | IPR004487 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro) | |
| Clacu05g1054 | 1220 | SUPERFAMILY | TRAF domain-like | 695 | 887 | - | - | |
| Clacu05g1054 | 1220 | ProSiteProfiles | Zinc finger RING-type profile. | 959 | 995 | IPR001841 | - | |
| Clacu05g1054 | 1220 | ProSiteProfiles | Zinc finger RING-type profile. | 642 | 678 | IPR001841 | - | |
| Clacu05g1054 | 1220 | Pfam | Sina, zinc finger | 691 | 766 | - | - | |
| Clacu05g1054 | 1220 | Pfam | Sina, zinc finger | 1008 | 1083 | - | - | |
| Clacu05g1054 | 1220 | PANTHER | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | 21 | 553 | IPR050052 | GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER) | |
| Clacu05g1054 | 1220 | SUPERFAMILY | RING/U-box | 629 | 681 | - | - | |
| Clacu05g1054 | 1220 | SUPERFAMILY | RING/U-box | 946 | 998 | - | - | |
| Clacu05g1054 | 1220 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 583 | 693 | - | - | |
| Clacu05g1054 | 1220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 604 | 694 | IPR013083 | - | |
| Clacu05g1054 | 1220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 923 | 1011 | IPR013083 | - | |
| Clacu05g1054 | 1220 | SUPERFAMILY | TRAF domain-like | 1012 | 1204 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu04g0147 | Clacu-Chr4:3637627 | Clacu05g1054 | Clacu-Chr5:9435367 | 8.50E-132 | dispersed | |
| Clacu05g1054 | Clacu-Chr5:9435367 | Clacu08g0195 | Clacu-Chr8:3926164 | 5.50E-182 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1054 | K03544 | - | csv:101215939 | 964.911 |