Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1066 ATGGAAAAGTTTGGAGATGAGGATGAGGCAGAGGTTTTGGGGTCGGACCCCACTGTGATGTTTTTGATTTCCCGATTCAGCAAAATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGGCTAACCAAGCTCCACCATACCTCCGCCTCCAAACCTACCAAAACAACTAAGCTCACTCTCACAAGAAAAACCAGATGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAACAGATGCTGCAGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGAGAAGAAATGGAAGACGATGCTGTTGTGCGGTCTGATGGTTTCAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCCATTCCTCTGTCAAGTTCCTCAGGTGGGACAATAACAGGGCAACTTCTGGTGAAATCTTTAGGGTTTTTTTTGACTTGGAGGAGCTGTACAAAGACTGCGTCGTAGCTTTACAAGGCGGCCTGCTATTGAATGGAGGGGATTTTGAAGTGATAAAATCGGCGTTGGAGAAAGCTTTTGATGATACTGATAAGAGATTACTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCCACTGTTGCATTCATTCGAAATGATGTGCTGTTCATTTCACATATTGGTGACTCTTGTATTGTATTATCTCGTTCTGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAATAACAGCACTTCACTACAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGCGGGGACATCTCTGTATCGCGTGCATTTGGTGACATACGATTCAAGACAAAGAAAATCGAGATGCTACAAAAAGGAGTTGAAGAAGGGAGATGGTCAGAAAAATTTATTTCTCGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTCCAAGTTACGCTCGGATCAAATGTTGAATTTATACTGATGGCATCAGATGGCCTATGGGATTACATGAATAGCTCTGATGCGGTTATATTTGTTCGGAATGAACTTCGACAGCATGGCGATGTTCAGCTAGCATGTGAAGCCCTCGCTCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCAAAATTTGCCCCTTAAGCAAGACAATGTCATATTTGAGCTGGCTCAAGCTTTCGCTACGATCGGACTTGTTTCTTTTGGTATTTGGGTAGGTCAGAATGGCTTAGATTATGACCAGCGGGGTCTTAATGGTAACATGTGGATCATCAGTAGTTATTTTGATTTTCAATATAACAACTGA 1368 43.64 MEKFGDEDEAEVLGSDPTVMFLISRFSKMALLSPRLHRFRLTKLHHTSASKPTKTTKLTLTRKTRCCSAIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGFNGFLFAAVFDGHGGHSSVKFLRWDNNRATSGEIFRVFFDLEELYKDCVVALQGGLLLNGGDFEVIKSALEKAFDDTDKRLLLLLEAAGEEDESGSTATVAFIRNDVLFISHIGDSCIVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKIEMLQKGVEEGRWSEKFISRVQFNGDLVTASPEIFQVTLGSNVEFILMASDGLWDYMNSSDAVIFVRNELRQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLKQDNVIFELAQAFATIGLVSFGIWVGQNGLDYDQRGLNGNMWIISSYFDFQYNN 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9525063 9529196 + ClG42_05g0106600.10 Clacu05g1066 248813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1066 455 Pfam Protein phosphatase 2C 87 384 IPR001932 -
Clacu05g1066 455 ProSiteProfiles PPM-type phosphatase domain profile. 85 391 IPR001932 -
Clacu05g1066 455 SUPERFAMILY PP2C-like 82 392 IPR036457 -
Clacu05g1066 455 CDD PP2Cc 84 391 IPR001932 -
Clacu05g1066 455 ProSitePatterns PPM-type phosphatase domain signature. 114 122 IPR000222 GO:0043169(InterPro)
Clacu05g1066 455 Gene3D - 84 397 IPR036457 -
Clacu05g1066 455 FunFam Protein phosphatase 2C 57 84 398 - -
Clacu05g1066 455 SMART PP2C_4 75 389 IPR001932 -
Clacu05g1066 455 PANTHER PROTEIN PHOSPHATASE 2C 75 390 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1066 Clacu-Chr5:9525063 Clacu08g0784 Clacu-Chr8:17866112 2.30E-24 dispersed
Clacu05g1066 Clacu-Chr5:9525063 Clacu11g0816 Clacu-Chr11:8067644 9.60E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1066 K04457 - csv:101218076 659.833