Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1072 ATGGAAAAATTGCCAACCGAAATCTGCCTGAAGATATTCTGTTTGTTGGATTCTCAGAACCTCGCAACCGCACTTCAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAAACCATGCTGCATTTTATCACCCAGTCGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTACCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGATCAAGAAGACAAAAGAATGGACAGACGAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTCCTGTCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCGACGGATGCAAAGCGCAGCAGAGCAAAAACAATTTTGAAGGCCTTGACAGCCAAATATAATACATATGAGCGAAACCTTCACTATGGGCAAGTTGTGGTAAATGTCTTTGAAGTTTGTTCATTACATATTGATGTCGTTTTGAAAAGAGGAGTATGGCCTTCTGTTCAGCGTCTTTACCAAAGGAAGCTCCAAAAGATGGCTGCTTTTGCCTCATTGCCCCTCACTTCGTCTTCTTTACATCCTGTTGTCCAATTCTCACCTCTTGTATTCTCCTCAACAGTTGTATATGACCCAAGTTCCTATTGCCTCACAGTCAGATCAATCAGACATGGAAAGCAAAAATTTTCCCCTCAGACCAACCGAAGGAGCCTGATAATTCTTGGTGCAGCAACAAAACAAGCAAAAACACCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTACAGAAAAGGGTAAGAAGTGTGGATGCTAATGAAGCTCTGCGCCTTCAGAAGGAAAACAAGTTTGTGATTCTTGATGTCAGGCCAGAAGCAGAATTCAAAGAGGGCCATCCACCAGGTGCCATTAATGTGCAAATCTACAGGCTTATAAAGGAGTGGACAGCATGGGACATAGCCAGGAGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACAGAAGAAAACCCAGAATTCTTGCAAAGTGTAGAATCTCAAATAGATAAAAATGCCAAAATAATAGTAGCATGTTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTCATTGATAGCAGCCTACTTGTTGGTTCTGAATGGCTACTCCAACGTGTTTCACTTAGAAGGTGGTCTCTACAGTTGGTTCAAAGAAGGATTGCCTGTAGTTTCAGAAGAGTAA 1371 42.74 MEKLPTEICLKIFCLLDSQNLATALQVCRKWNSLASDNILWSNLFKERWGENHAAFYHPVGSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAKTILKALTAKYNTYERNLHYGQVVVNVFEVCSLHIDVVLKRGVWPSVQRLYQRKLQKMAAFASLPLTSSSLHPVVQFSPLVFSSTVVYDPSSYCLTVRSIRHGKQKFSPQTNRRSLIILGAATKQAKTPAEEDWKVKRELLLQKRVRSVDANEALRLQKENKFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQIDKNAKIIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYSNVFHLEGGLYSWFKEGLPVVSEE 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9567769 9572812 + ClG42_05g0107200.10 Clacu05g1072 248819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1072 456 Gene3D - 295 452 IPR036873 -
Clacu05g1072 456 ProSiteProfiles Rhodanese domain profile. 321 454 IPR001763 -
Clacu05g1072 456 SMART fbox_2 4 44 IPR001810 GO:0005515(InterPro)
Clacu05g1072 456 Coils Coil 159 179 - -
Clacu05g1072 456 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 227 455 IPR043186 GO:0009507(PANTHER)
Clacu05g1072 456 SUPERFAMILY F-box domain 2 73 IPR036047 GO:0005515(InterPro)
Clacu05g1072 456 Pfam F-box-like 2 46 IPR001810 GO:0005515(InterPro)
Clacu05g1072 456 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 306 453 IPR036873 -
Clacu05g1072 456 SMART rhod_4 311 451 IPR001763 -
Clacu05g1072 456 CDD RHOD 315 445 - -
Clacu05g1072 456 ProSiteProfiles F-box domain profile. 1 44 IPR001810 GO:0005515(InterPro)
Clacu05g1072 456 FunFam Rhodanese-like domain-containing protein 14, chloroplastic 295 453 - -
Clacu05g1072 456 Pfam Rhodanese-like domain 313 447 IPR001763 -
Clacu05g1072 456 Gene3D - 1 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1072 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g1140 . 157 472 Sulfurtransferasese/Rhodanese AT1G79230 75.6 4.9e-146 514.2
Clacu05g1140 . 157 421 Sulfurtransferasese/Rhodanese AT1G16460 73.6 2.0e-113 405.6
Clacu04g1203 . 97 373 Sulfurtransferasese/Rhodanese AT5G23060 60.5 2.2e-82 302.8
Clacu05g0106 . 457 917 Sulfurtransferasese/Rhodanese AT4G01050 51.7 4.0e-118 422.2
Clacu01g1144 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 63.9 7.3e-225 776.9
Clacu07g0541 . 84 436 Sulfurtransferasese/Rhodanese AT2G40760 75.6 1.5e-156 549.7
Clacu10g1514 . 562 890 Sulfurtransferasese/Rhodanese AT1G17850 69.2 4.6e-142 501.5
Clacu04g0145 . 30 235 Sulfurtransferasese/Rhodanese AT2G42220 73.8 9.2e-86 313.5
Clacu10g2172 . 470 650 Sulfurtransferasese/Rhodanese AT3G08920 63.0 1.8e-64 242.7
Clacu06g1850 . 1 292 Sulfurtransferasese/Rhodanese AT4G24750 66.8 3.5e-111 398.3
Clacu02g2327 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 66.1 2.6e-85 312.4
Clacu10g0496 . 113 454 Sulfurtransferasese/Rhodanese AT5G55130 73.7 4.2e-146 514.6
Clacu05g1072 . 276 456 Sulfurtransferasese/Rhodanese AT4G27700 79.0 3.0e-78 288.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30