Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1079 ATGGATTCTGACCGCCATTTTCGTACCACAAGCAGCAACAGTACCAGTTCCACCGCCGCACCCTCTAGCGAGCTCTTCATTTGCTTCACTTCTCGCTTCTCTTCTTCTTCCTCCATGAAGATCTCCTCCAAGTCCATTCTCAGTCCCGGCCGTGCTCGTGAGCCCTCCCAAATCTCCCTCTCTACTTCCCTCAGCCGCCGTCTCAAATCCAGCGGTAGTCTCAAGGGCGGTCAAGCTTCCCCCATGTTTCCCACTGGCGGGAAGAAGCGAGGCTGTGCCTTTGACAATCCGGAACCCTCTTCGCCCAAGGTCACTTGCATTGGTCAGGTTAGGGTTAAGACGAAGAAGCAGGGGAAGAAAATGAGGGCTAGATCGCAGAAGCGAAGGGGTAATTCGGAGGCAAGCTTTCGGAGATCGGAGAGTGTTGTTCAATCGTCGCAGATGAATGGTAATGACCAGCAATTCTCGTCGCATCATAATCATCATCTTCTTCGTCAGAACAGTAACAACAATGGTGGAAACGGTTTCCAGCAGGAATGCTTGTCGCATCGGAACCAACGGTGGGTCCATTTGCCGTTTACGATTTGCGAGGCGCTCAGGGCTTTTGGTGCTGAACTCAACTGCTTCTTGCCGTGCCATTCGTCGTGTTCCAGCGATAGGGAGAATAATAAGGAATCCAAGCCGGCGGAGAGGTCGTCGGGGACCGAGAGTTCTTGCGGGACGGTGTTTGCGCGGTGGTTGGTGGCGGTTCAGGATGGAGACGGAAAGGGGAGGGAGATCGAGCTGGTGGTTGGAGACGAAGAAACTCGAACGGAGAAGGAAAACGGAAGCCAGAGACGGCATGTTTTTGAGGGCTTAGATTTCAAAGACGAGAATGAAGTTGTGGAGGAAGAGCAATCCAGGATCAGCATTTGCATTCCGCCAAAGAATGCTTTATTGCTAATGAGGTGCAGATCTGATCCGGTGAAAATGGCGGAACTCGCGAAACGATTCTGTGAATCTCCTGCGCCAAAAGTGGATGAAGAAGACGAGGAAGAAGAAGATGAAGACAATGAAGCGAAAAATAGACAAAATGAAGTGAAAAAAGATGAATCTGTGTCACTGCCTGTATCTTCCACTGTGACTGTAAGTAAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAAGTGGAGCTAATTGTGAAGCTTACAAACGAGAAAGAAATGAATGAAGAATCTGTTTCTGATGCAGAAAAAGAAAAGGAAGAAGCTAATGCGGTTTTAGAGGAAGAAGAACGAGAAGAGGAAGATAATGGAGAAGAAACCACAGAAATGGCCACAGAAAACGAAATCGCTGAGCAGAAACCAGACATTACTGTGGTAAATCAGCATAATCAAGAACAACCCGTGGAAGAAGAAGATAAAATCGTTCAAGATAATCAGCAAGAAACAATGGCGATCCCAATTCAAATTCCGATTCAAACCCACTGTGAACCCGAAATGGCTCAAGATGCAGAGAAGCCGGAATCGGTCGAAGAAGACGAATCCAAGCTACCCCATGGAAGCGAACAAGACCAGAAAACAGAAGAAGACGAAAACCTGAGAGAAGAAGAAGAAGAAGAAGAAGGCGAAAATGGCGAAAACCTCAGTTTACCATCATTATCAGTAGAGACAGAACCAGTTTTAGACGAAACCGAAACTGAAGTTTATTGGAATTGGGAAGAAGAAGAAGAAGAAGAAGAGAAAGCGACGGATGAAGGAATCGGACCCGACAAGCAAAACGACGACGAATTGATGGGTCCAGAGGAGGACCAGTCAAAGGAGCGAGAAACTCCACCGCCGGAGCCGGAGAGAAGAACACCAACAGAAACATCCGTTCTCCCAGATTGCTTGCTGTTAATGATGTACGAACCAAAGCTATCAATGGAGGTATCAAAGGAGACATGGGTTTGCAGCACAGACTTCATAAGGTGCGTTCCAACCAGGGAGAAGAAGCCGGCCGGCAGAGACCCACCGCCGCCTCCGCCGCCGAAGAAACGGGAAATAAAGCCGGTGGACACCACGCAGGCGGCAGTAGTACAGCCGGCGAGATGGTCGTGTTCGTTTCCAGCGGCGGCGGCTGCGGCGGCGATGATAGAACAGAAGCTAGTAAGGGCCAAGGGTTACGAGCCGTTTGTTCTTACTAGATGCAAGTCTGAGCCGATGAGATCGTCGGCTAAGCTGGCGCCAGACGCTTGCTTTTGGAAGGATCGCAAACTAGAGCCACACCGTCCGGCTACCTTCGGCATCAGCGCGGCTGAAGTTGGATTTTGA 2313 49.33 MDSDRHFRTTSSNSTSSTAAPSSELFICFTSRFSSSSSMKISSKSILSPGRAREPSQISLSTSLSRRLKSSGSLKGGQASPMFPTGGKKRGCAFDNPEPSSPKVTCIGQVRVKTKKQGKKMRARSQKRRGNSEASFRRSESVVQSSQMNGNDQQFSSHHNHHLLRQNSNNNGGNGFQQECLSHRNQRWVHLPFTICEALRAFGAELNCFLPCHSSCSSDRENNKESKPAERSSGTESSCGTVFARWLVAVQDGDGKGREIELVVGDEETRTEKENGSQRRHVFEGLDFKDENEVVEEEQSRISICIPPKNALLLMRCRSDPVKMAELAKRFCESPAPKVDEEDEEEEDEDNEAKNRQNEVKKDESVSLPVSSTVTVSKEEEEEEEEEEEEEEEERKVELIVKLTNEKEMNEESVSDAEKEKEEANAVLEEEEREEEDNGEETTEMATENEIAEQKPDITVVNQHNQEQPVEEEDKIVQDNQQETMAIPIQIPIQTHCEPEMAQDAEKPESVEEDESKLPHGSEQDQKTEEDENLREEEEEEEGENGENLSLPSLSVETEPVLDETETEVYWNWEEEEEEEEKATDEGIGPDKQNDDELMGPEEDQSKERETPPPEPERRTPTETSVLPDCLLLMMYEPKLSMEVSKETWVCSTDFIRCVPTREKKPAGRDPPPPPPPKKREIKPVDTTQAAVVQPARWSCSFPAAAAAAAMIEQKLVRAKGYEPFVLTRCKSEPMRSSAKLAPDACFWKDRKLEPHRPATFGISAAEVGF 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9647091 9649403 + ClG42_05g0107900.10 Clacu05g1079 248826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1079 770 MobiDBLite consensus disorder prediction 1 21 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 561 584 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 334 459 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 530 546 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 427 447 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 40 178 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 585 617 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 662 683 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 500 529 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 395 426 - -
Clacu05g1079 770 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 21 750 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 136 178 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 40 78 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 215 237 - -
Clacu05g1079 770 Coils Coil 520 544 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 338 352 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 378 394 - -
Clacu05g1079 770 Coils Coil 373 441 - -
Clacu05g1079 770 Coils Coil 339 359 - -
Clacu05g1079 770 MobiDBLite consensus disorder prediction 481 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1079 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1079 Clacu-Chr5:9647091 Clacu10g2016 Clacu-Chr10:33632993 1.00E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34