Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1083 ATGCGATTGTCGTCGGAATCAGTTTCGTCGTCATTGAAGCAGAGTGGGAATCGGTCTGGGTCTAGGCTTAAGAAGAAGCACAAGAGGCTTGATGCCATATGCGAGAAAGAGTATAGTAGAAACCATGGCGATGTGAATGAGAATGTTAGTGGGTTGGGGACTGGGGAGGCTGACCTTGGGCTTCGACGGAGCAGCCGTGTTCGTCGGGCCCCAGTCTTGCTTGATGCTTCCCCTATGCCAAGGAAGAAGCGGCGGATGGTTCATGGGAATGGAACTTTGGGTGTTAAAACGAGTGCTAACACTCTGCCGCAGTTGAGAGATGATTTGAATGATGAGGCACAGGGGAATTGGAGATCGAGGTTGAGATCAAGGAACCGAAATTTGGGGATTAGAGTGGACAAAGGTGTTCGGGCTAGCAGGAAAAGGAAACTTTTTGATGAAATTATTAATGTGGAAGTAAGAAGTAGTGTAATGAGGATGGATTTGGATGAGGCAAAAGGAAAAATGGAATACGGGGAATCTATGGTTGGAAGGTCTAACAGATTGACGAGGAGGTTTGGAGTGACGAATGATCCAATTAAAACAGAAAAGGAGGTGAAGTCTCCTCAAATTAAGGATGATTGTTACAGGGAAGACATTTTGGAAATCAATAATGAAGATACAGAGGAGGAGGAAGAAGAAGAAGGGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAGGTGGTGGTGGTGGAAGGCAAAGAAGCCACGACTGCTAACAATGAGAGAGGGGAGGGTGTTTTGCCTTTGGAAAATGAAATGGATGATGAAAATGTGAAGGCAGTGGATGATGCTGTTACTCAGGTTGTTGAAAAATTGGACAAAGAAACTTTGAGTTCTTTGCACGCAGATGAGGCTTGTAGTGGTGATCATAATGAAGAACCAGCCAATGAGGTGGAGAATGCAAACAATGGTGAGATACAGCTAGAAGAATTAACACAGCTAAATGAAGGTGTGAATGAAATTCATGATGTAGAAGCTGCTGTAGTTTCAACAAATGAAGTGGTAGGTGGAAGGTCTTGCAACGAGAAAGCTGTTGATTTGGGCAAGTTTGCTGAAAAATCTAGGCAAGATGGTGTTGATTTAAATTTAAAGAAGTTTGCAGACAGTTCCACAGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCAGAAGGTGTGGATTGTGTGGAGGAGGAATTGATGGTAAACCTCCCAAGAAGTTGGTTCAAGATTCTGGTGAGAGTGAACATGAAACATGTAGTGGCTCTTCAGCTTCAGAGGAACCAAATTATGACAAGTGGGATGGTTTTGGCGATGAACCTGGATGGCTTGGACGCCTCTTAGGTCCTATTAATGATCGTTATGGCATTGCTGGTATATGGGTCCATCAACACTGTGCAGTTTGGAGCCCCGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAATGCACTCGGTGTGGGAGACCTGGAGCAACCATCGGATGTCGTGTTGATCGATGCCCAAAAACTTACCACTTGCCTTGTGCACGTGCTAATGGTTGCATATTTGATCACCGCAAATTTCTCATAGCTTGCACAGATCATCGCCACATCTTCCAACCTCACGGCAATCAATATTTAGCTCGTATAAAGAGATTAAAGGCCAAGAAAATGAAATTGGAAATAAAAAAGCAATCAAATGACGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGCTGGAGAACTGTGGGGAAGATGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTAAGAATTGCACCTGTATATATTGGTGGGTCAAACTCAGAAGGAGAGAACTTGTTTCATGGTTGGGAGTCAGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAAGAAGTAGTATTCTTACCACTTTTGTATCCTGAGCTTTTTGATCGCTTTGGGATCACACCTCCTAGAGGTGTTCTTTTGCATGGATATCCTGGAACTGGTAAAACACATGTTGTTCGAGCACTGATTGGTTCTTGTGCTCGTGGAGATAAACGGATAGCATATTTTGCTCGTAAAGGAGCCGATTGCTTAGGGAAATATGTTGGTGATGCAGAACGTCAGTTAAGACTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGATTGGCACCTTGTCGTACAAGGCAGCAAGATCAAACGCATAATTCAGTTGTGTCTACATTGCTTGCTCTATTAGATGGTCTAAAATCTCGGGGGTCTGTTGTAGTTATTGGTGCCACAAACCGCCCTGAGGCAGTTGATCCAGCTTTAAGGAGGCCTGGGAGATTTGACCGGGAGATTTATTTTCCTTTGCCATCGGTTGAAGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAGGTGGCCAAAGCCAGTTGATGGACCCTTACTCCAGTGGATTGCTAGAAAAACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACCCAAGCAGCCATGAGTGCTTTGAAAAGAAATTTTCCTCTTAAAGAAGTCCTGTCAGCTTCTGGGGAACAAGTTTCGAGAGATAACCACCCTCCTCTTCCGTCCATTTTAGTGGAGGAGCGAGATTGGTTAGAAGCTTTATTATATTCTCCACCTCCATGCTCACGTAGAGAAGCAGGGATGGCTGCTAATGATGTGGCATCTTCTCCTCTTCCCTTCCATCTCATTCCTTGTCTGCTTCAACCACTGTCAACTTTACTTGTTTCCCTTTATCTCGATGAACGCATCTGCTTGCCAACTAATCTTTTCAAAGCTGCAACTTTAATTAAAAGTGTCATCGTTAGTGCTTTGGATGGAAGGAAAATTGTCACTAGTTGCTGGTGGTCACATGTTCATGATTTTGTTCAGGATGCTGATATTGCAAATGAGATAGAGGTAAAGCTGCAGGGTTCTGGAGTGTTACTTGAGGATTCTACTTTTGGCGGTTCTGGTGTTCTCAACAACACAAGCAGTGAAGGTTCCAAGTTTGAAAATGTAGGTCATCATGGTGGCCCACCCTCTACCGTGGTAGAGCACACATCATTCACCTGGGGAAATAAGTCTGGCTTTCGAATTTTGATTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCCTCTTGTCTTCTTCACTGTTATATTCAACATGTTGAAATTCGAAAGGTTGATATAGCTACAATTTCACAAGAAGGTCATGGTGATTTGGTGCAAGGCATATCACAAATATTGTTGAATTGCTCTAGCATGGGGTCGTGTCTGGTGTTCATGCCAAGAATTGACTTGTGGGCTATTGAGACACAAAGTCAAACGTCTGAGGAGTGTGATTTTTATCTGAATGAGGATCAGTATCTTGCGGATGGAAATATTGTCAAAGACGCCCACCTTGGTGGAAGGGAAAACCATGGTTATTCAGACCAATGCAAATCAACTAAGAGGACTGGACTTCAAGACGATTCTCTGTCTAGTGCTTCATATGCTTGGAGTTCATTTGTTGAGCAAGTTGAATCGCTATCTACTCCCTTGATGATTTTGGCCACATCAGAAGTTCCATTTTTGCTACTTCCACAAGAGATAAGGCAGTTCTTCAGGAATGACTTGTCAATTTGTCGGCCAACTACTTCGGAGCATTCGGTACCTAGGTTCTCTGTCCAGATTGATGGAGTTTTCGACCATGACATGGTAATCAATCATTCTGCTGCAGAATTATCAAGGGACATAGTGAAACTGCTTGTTCATTTGATTCACCAAAAGTCTCACACCAAAACATCCGCATGCACAAAGAACCAAGTTTCTGTAATCCAAGGTGAGAGTAATGCTGCAAATCAGCAAATAGATAAAGGAACTGCCAGCGAGCACAATGGAGAAAAGAAGTCTCCTGATGTGTCTTCTGTTAGAATTGCACCACTACCTGGCAGTAAAACCATGAGAGTGAAATCAAACTTGATTTCAGTAATATCTACTTTTGGCTATCAAATTCTGCGATACCCCCATTTCGCTGAGCTTTGTTGGGTGACTTCAAAGTTGAAAGAAGGCCCCTACGCAGACGTTAGTGGACCCTGGAAGGGATGGCCATTCAATTCTTGTATTATTCGCCCCATGAGCACATTGGAGAAGGTAGCATCAAGCAGCTTGAGTAATGGAAAATCTAAAGAAATTTCGGGTTTGGTAAGAGGCTTGATTGCTGTTGGTTTATCAGCAATCAGAGGTGCCTACACATCCTTAAGGAAAGTCTCTTTTGATGTGCGATTGGTACTTGAACTCCTAGTTGAACAGATAAATGCAAAAATTAATTCCGGGAAAGACCAGTATCAATATTTTCGCCTTCTATCACAAGTTGCGTATCTGGAAGATGTAGTTAATAGCTGGGCCTTCACTCTGCAAAGCTTAGAACATGACTCGAGAACAACGGAAACGTCAAAGAATCACACTTCTGGTGGTAATGAGATTCAGTGTGAGAAAAACGAACCCATTATATCCAACAAAGGCTCTCTTACAAATGAAATTCCAGAAGTCAGTTGTCAGGAACCTGCTGTTGAGGAGGAAGTTGTAGCCATTGATTCCTTGGTAGATGGAGATTTGAATCATTCTAATTCCAAGGATACTACATTCGTATCAGGACATGGAGAGAGGAATTTTGGCATAAAAAATTCAGTCTCTAACGAGTCCCATGACAATGCTGCTGCTGTTGACCAATTAGCTGAAAATATTCCATTGAAGCACAATGAGACAACAGTAGTTGCACCGGAAAATTTGGTCAATGATAGAAACGGCAAATCGGTTAAAGCACCATTAAATTTGGGAGCAGAATCAATAGTCAATTTGGAACATAATCATCCAAATTCAAGTGAGTTATGTGGTGATGAAATGCCGAGCTGCACAAAACCCTGCGGCAACAGTAATGAAGTTTGTTCCGCCTTAGAAAATGGTTGCAAACGTGACAATAGTAAGCCCGACTCAAATGACTGTGAAGTGAATGCTCACTCCTCTCCGAGCAGAACTGGCCTCTCTACCAACTCTGCACTAGTATGCTCTATTCGGTGCTGCACTGGTTGTTTAAACGTCCTCTACAGCGTGACAAAAACTATTATTCACAAGGAATTGGGATCAAATCGAAATAATTGGACTGTAGAGGATGTTCATGATAACGTTGTGGCACTTTCAGTTGACCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGGAAACGACACTCGTGTATTTGACAATAGACAAATGGGAGGAAATGACAGGTTTAAATCTTCGGACTCGAGAAGTTGTGATTGCAAAAGTTCAAAAGACATGGTATTTAATGGAGTGGAATGTATTTGTCACTGTGAAAACGAAAGTTTGAGTGAAAAAGAAAAGGCCTCTCCTTATTCTGAAATGGGGATTGACCCCAACTTTATATCCAGAGATGGTGTATTGGTTAGTGTAGATCCCAAAAAGAATGCTTCGTTTCATTGTAAATTGGAGACTTTGTGCCTCTGTTCTCTTACAGAGTTGATAGTAATGGCAAATAAGCCTTTAAATTGA 5658 42.7 MRLSSESVSSSLKQSGNRSGSRLKKKHKRLDAICEKEYSRNHGDVNENVSGLGTGEADLGLRRSSRVRRAPVLLDASPMPRKKRRMVHGNGTLGVKTSANTLPQLRDDLNDEAQGNWRSRLRSRNRNLGIRVDKGVRASRKRKLFDEIINVEVRSSVMRMDLDEAKGKMEYGESMVGRSNRLTRRFGVTNDPIKTEKEVKSPQIKDDCYREDILEINNEDTEEEEEEEGEEEEEEEEEEGEGEEEEEEVVVVEGKEATTANNERGEGVLPLENEMDDENVKAVDDAVTQVVEKLDKETLSSLHADEACSGDHNEEPANEVENANNGEIQLEELTQLNEGVNEIHDVEAAVVSTNEVVGGRSCNEKAVDLGKFAEKSRQDGVDLNLKKFADSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKLVQDSGESEHETCSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKAKKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLFHGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQRWPKPVDGPLLQWIARKTAGFAGADLQALCTQAAMSALKRNFPLKEVLSASGEQVSRDNHPPLPSILVEERDWLEALLYSPPPCSRREAGMAANDVASSPLPFHLIPCLLQPLSTLLVSLYLDERICLPTNLFKAATLIKSVIVSALDGRKIVTSCWWSHVHDFVQDADIANEIEVKLQGSGVLLEDSTFGGSGVLNNTSSEGSKFENVGHHGGPPSTVVEHTSFTWGNKSGFRILIAGNPRSGPRHLASCLLHCYIQHVEIRKVDIATISQEGHGDLVQGISQILLNCSSMGSCLVFMPRIDLWAIETQSQTSEECDFYLNEDQYLADGNIVKDAHLGGRENHGYSDQCKSTKRTGLQDDSLSSASYAWSSFVEQVESLSTPLMILATSEVPFLLLPQEIRQFFRNDLSICRPTTSEHSVPRFSVQIDGVFDHDMVINHSAAELSRDIVKLLVHLIHQKSHTKTSACTKNQVSVIQGESNAANQQIDKGTASEHNGEKKSPDVSSVRIAPLPGSKTMRVKSNLISVISTFGYQILRYPHFAELCWVTSKLKEGPYADVSGPWKGWPFNSCIIRPMSTLEKVASSSLSNGKSKEISGLVRGLIAVGLSAIRGAYTSLRKVSFDVRLVLELLVEQINAKINSGKDQYQYFRLLSQVAYLEDVVNSWAFTLQSLEHDSRTTETSKNHTSGGNEIQCEKNEPIISNKGSLTNEIPEVSCQEPAVEEEVVAIDSLVDGDLNHSNSKDTTFVSGHGERNFGIKNSVSNESHDNAAAVDQLAENIPLKHNETTVVAPENLVNDRNGKSVKAPLNLGAESIVNLEHNHPNSSELCGDEMPSCTKPCGNSNEVCSALENGCKRDNSKPDSNDCEVNAHSSPSRTGLSTNSALVCSIRCCTGCLNVLYSVTKTIIHKELGSNRNNWTVEDVHDNVVALSVDLLAAVRRAFLDGNDTRVFDNRQMGGNDRFKSSDSRSCDCKSSKDMVFNGVECICHCENESLSEKEKASPYSEMGIDPNFISRDGVLVSVDPKKNASFHCKLETLCLCSLTELIVMANKPLN 1885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9680533 9689763 - ClG42_05g0108300.10 Clacu05g1083 248830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1083 1885 MobiDBLite consensus disorder prediction 217 251 - -
Clacu05g1083 1885 MobiDBLite consensus disorder prediction 1317 1340 - -
Clacu05g1083 1885 Pfam ATPase family associated with various cellular activities (AAA) 682 817 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g1083 1885 FunFam ATPase family, AAA domain-containing 2 642 824 - -
Clacu05g1083 1885 MobiDBLite consensus disorder prediction 420 446 - -
Clacu05g1083 1885 Gene3D - 818 910 - -
Clacu05g1083 1885 PANTHER AAA DOMAIN-CONTAINING 37 1879 IPR045199 GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Clacu05g1083 1885 MobiDBLite consensus disorder prediction 217 270 - -
Clacu05g1083 1885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 558 IPR013083 -
Clacu05g1083 1885 Gene3D - 643 914 IPR027417 -
Clacu05g1083 1885 ProSiteProfiles Extended PHD (ePHD) domain profile. 436 556 IPR034732 -
Clacu05g1083 1885 SMART AAA_5 678 819 IPR003593 GO:0016887(InterPro)
Clacu05g1083 1885 ProSitePatterns AAA-protein family signature. 787 805 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu05g1083 1885 MobiDBLite consensus disorder prediction 1 18 - -
Clacu05g1083 1885 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 402 558 - -
Clacu05g1083 1885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 875 IPR027417 -
Clacu05g1083 1885 MobiDBLite consensus disorder prediction 1 28 - -
Clacu05g1083 1885 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 818 910 - -
Clacu05g1083 1885 Pfam PHD-like zinc-binding domain 477 556 - -
Clacu05g1083 1885 Coils Coil 211 248 - -
Clacu05g1083 1885 Pfam AAA+ lid domain 843 875 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1083 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0032 Clacu-Chr4:521634 Clacu05g1083 Clacu-Chr5:9680533 2.50E-293 dispersed
Clacu05g1083 Clacu-Chr5:9680533 Clacu10g1501 Clacu-Chr10:28269849 2.30E-94 dispersed
Clacu05g1083 Clacu-Chr5:9680533 Clacu04g0976 Clacu-Chr4:23940484 1.00E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60