Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1087 ATGAGATCTCTACTGGTCTCAGAGGTGATGGTGGTTAATCTTGTCAAACCGTCTTTCCTCAAATGGATATTATTGAGTTGCTTGCTTTCTTTCTCGCTGGCTCTGAAACAGACTAATAAAGTCTGTGATTCAAAAGATTTACTGGCATTGAGGGGCTTTGTGAATAGCCTTGCAAATAGTTCTGTTCTCTCTGTATGGTTAAATGAATCCAACTGCTGCAATTGGGATGGTGTGGATTGTGGATATGATGGCAACAGCTCGCGCACTAACAGAGTTACCAGGTTAGAGCTGCCTAATATGAATCTGAAAGGCAAGATTTCACAATCACTTGGTGGTTTAGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTATTGCCAACAGAACTCTCAAGCTTGAAGCAACTCCAGGTTTTGGATTTGAGTTACAATAAATTGTCAGGACCAGTCACCAATGCAACTTCAGGATTGAAATCTGTTCACGTTCTGAATATTTCAAGCAATTCATTCATTGGGGATTTTCCCCAGCTTGTGGGTTTTCAAAATCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACGGGCCGGTTAGCTTCACAGATTTGCAATTCCTCCATCATGATTCAGGTTGTTGATATTTCACTGAACCGAATATCTGGAAATCTTCAAGGTTTGGACAATTGCAGCAAATCTCTCAAACATTTTCGTGCAGACAGTAACTTCCTTACTGGCCATCTGCCAGATTCGTTGTATTCATTATCATCCATGGAGTATTTCTCAATCCCTGGGAACAGCTTCTTTGGCCAATTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATAGTATTTGGAAACAAATTTTCTGGTGAACTTCCAAATGTGTTTGGTAATTTTTCAGAACTACAGGAGTTAGTTGCACACTCCAACTTGTTCTCTGGATTATTGCCTTCATCTCTGTCATTGTGCTCAAAGCTCAGAGTGTTTGATCTTAGAAATAATTCTTTAACTGGTACTATAGATCTCAATTTTTCTAGGCTACCAAATCTTCAAATGCTTGATCTAGCCTCGAATCACTTTTCTGGGGCCCTACCAAATTCTCTATCTGATTGCCATGAACTGAAAACTCTTAGCCTTGCCAAAAACAAGTTAACTGGTCAAATTCCTCGAAATTATGCAAAGCTTTCCTCTCTGTCCTTTCTATCTTTGTCAAACAACAGTATCATAGACTTGAGTGGTGCACTATCTATTTTACAAAATTGCAGAAATCTGACTGTTCTTATTCTTACAAAGAACTTTCGTAATGAGGTACTTCCACAGAGTGAAACTGTTTTCAACAACTTGATGCTTTTGGCATTTGGTAACTGTGGTCTGAGAGGACAAATTCCAGGTTGGTTAATAGGTTGCAAGAAATTAAGCATCCTCGACTTGTCGTGGAATCACTTAAATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGAAAATTTGTTTTATTTGGACTTATCCAACAATTCTCTGACAGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAGAAACGGCAGCTTGTCGGGTTCCACATCATCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTGCTACTGGTTTGCAATACAACCAAGCGTCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATTAATGGAACTATTTTTCCGGAAATTGGCAGATTAAAATGGCTGCATGTCTTGGATTTGAGTAGGAATAATATTACTGGGTCCATACCGAGCACCATATCAGAGATGGAGAACTTGGAAACATTAGATTTGTCGAATAATGATCTTTATGGACAAATTCCACCATCACTCAACAAGCTCACCTTCTTGTCAAAGTTTAGCGTGGCAAATAATCACTTGGAGGGACCAATTCCTAATGGAGGCCAATTCCTAAGCTTTCCCAGCTCCTGCTTTGATGGTAATACAGCACTTTGTGGGGAAATTGACAACCCTTGTCATTCTGTTGATGGGTTAGAAACAAAACCCGAAACCAACAATTACTCAAAGAGAAAAGTTAATAGAAGCATCATTCTTTGCCTTACAGTCGGTGCAGCTGCAGCAATCCTCCTGCTCCTTACAGTGGTTTTACTCAAAATGTCCAGGAAAGATGTTGGAGATCGACGAAATAACAGGTTTGATGAGGAATTTGACAGGCCTGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCAGAGTTGTTAAAAGCTACTTGCAATTTCAACCAAGCGAACATAATAGGCTGTGGTGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGAGCACAGCATAAGAATCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTACTGGCTTCACGAGGTTGTTGATGATGATTCAATACTAAAATGGGAAGCAAGACTCAAAATCGCACAGGGTGCTGCTCATGGATTGGCTTACTTGCATAAGGAATGTCAGCCCAACATAATCCACCGAGATGTAAAATCAAGCAACATACTTCTAGATGACAGATTTGAGGCTCATTTAGCTGATTTTGGCCTTTCAAGATTACTCCGGCCATATGACACTCATGTTACGACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTAACTGCAACTTGCAGGGGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACTGGTCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCTTGGGTGATTCAAAAAAAATCAGAGAAGAGAGAAGAGGAGATTATTGATCCTGCAATTTGGGACACTAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACGTTGTAG 3171 40.37 MRSLLVSEVMVVNLVKPSFLKWILLSCLLSFSLALKQTNKVCDSKDLLALRGFVNSLANSSVLSVWLNESNCCNWDGVDCGYDGNSSRTNRVTRLELPNMNLKGKISQSLGGLDQLIWLNLSYNQLEGVLPTELSSLKQLQVLDLSYNKLSGPVTNATSGLKSVHVLNISSNSFIGDFPQLVGFQNLVAFNISNNSFTGRLASQICNSSIMIQVVDISLNRISGNLQGLDNCSKSLKHFRADSNFLTGHLPDSLYSLSSMEYFSIPGNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELQELVAHSNLFSGLLPSSLSLCSKLRVFDLRNNSLTGTIDLNFSRLPNLQMLDLASNHFSGALPNSLSDCHELKTLSLAKNKLTGQIPRNYAKLSSLSFLSLSNNSIIDLSGALSILQNCRNLTVLILTKNFRNEVLPQSETVFNNLMLLAFGNCGLRGQIPGWLIGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISRNGSLSGSTSSAGIPLFVKRNQSATGLQYNQASSFPPSIYLSYNRINGTIFPEIGRLKWLHVLDLSRNNITGSIPSTISEMENLETLDLSNNDLYGQIPPSLNKLTFLSKFSVANNHLEGPIPNGGQFLSFPSSCFDGNTALCGEIDNPCHSVDGLETKPETNNYSKRKVNRSIILCLTVGAAAAILLLLTVVLLKMSRKDVGDRRNNRFDEEFDRPDRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEVVDDDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIIDPAIWDTNSKKQILEVLGITCKCIDQDPRKRPSIEEVSSWLDGVTL 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9710322 9713492 - ClG42_05g0108700.10 Clacu05g1087 248834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1087 1056 SUPERFAMILY Protein kinase-like (PK-like) 761 1051 IPR011009 -
Clacu05g1087 1056 Gene3D Ribonuclease Inhibitor 161 400 IPR032675 -
Clacu05g1087 1056 Gene3D Ribonuclease Inhibitor 416 530 IPR032675 -
Clacu05g1087 1056 SMART serkin_6 780 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1087 1056 ProSiteProfiles Protein kinase domain profile. 780 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1087 1056 FunFam Leucine-rich repeat receptor-like protein kinase 856 1056 - -
Clacu05g1087 1056 FunFam Tyrosine-sulfated glycopeptide receptor 1 350 683 - -
Clacu05g1087 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1087 1056 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Clacu05g1087 1056 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524(InterPro)
Clacu05g1087 1056 ProSiteProfiles Leucine-rich repeat profile. 403 425 IPR001611 GO:0005515(InterPro)
Clacu05g1087 1056 Pfam Protein kinase domain 781 1047 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1087 1056 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 251 346 - -
Clacu05g1087 1056 SUPERFAMILY L domain-like 245 526 - -
Clacu05g1087 1056 Gene3D Phosphorylase Kinase; domain 1 749 855 - -
Clacu05g1087 1056 ProSiteProfiles Leucine-rich repeat profile. 611 634 IPR001611 GO:0005515(InterPro)
Clacu05g1087 1056 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 30 1054 IPR050647 -
Clacu05g1087 1056 FunFam Phytosulfokine receptor 1 743 855 - -
Clacu05g1087 1056 Gene3D Transferase(Phosphotransferase) domain 1 856 1055 - -
Clacu05g1087 1056 SMART LRR_typ_2 137 160 IPR003591 -
Clacu05g1087 1056 SMART LRR_typ_2 499 523 IPR003591 -
Clacu05g1087 1056 SMART LRR_typ_2 353 376 IPR003591 -
Clacu05g1087 1056 SMART LRR_typ_2 609 633 IPR003591 -
Clacu05g1087 1056 SMART LRR_typ_2 401 424 IPR003591 -
Clacu05g1087 1056 SMART LRR_typ_2 113 136 IPR003591 -
Clacu05g1087 1056 PRINTS Leucine-rich repeat signature 609 622 - -
Clacu05g1087 1056 PRINTS Leucine-rich repeat signature 502 515 - -
Clacu05g1087 1056 Gene3D Ribonuclease Inhibitor 567 678 IPR032675 -
Clacu05g1087 1056 FunFam Nuclear pore complex protein NUP107 43 184 - -
Clacu05g1087 1056 Pfam Leucine Rich Repeat 477 499 IPR001611 GO:0005515(InterPro)
Clacu05g1087 1056 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Clacu05g1087 1056 Pfam Leucine Rich Repeat 331 353 IPR001611 GO:0005515(InterPro)
Clacu05g1087 1056 SUPERFAMILY L domain-like 42 322 - -
Clacu05g1087 1056 Pfam Leucine rich repeat 354 414 IPR001611 GO:0005515(InterPro)
Clacu05g1087 1056 Pfam Leucine rich repeat 567 622 IPR001611 GO:0005515(InterPro)
Clacu05g1087 1056 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515(InterPro)
Clacu05g1087 1056 SUPERFAMILY L domain-like 555 671 - -
Clacu05g1087 1056 Gene3D Ribonuclease Inhibitor 43 160 IPR032675 -
Clacu05g1087 1056 CDD STKc_IRAK 786 1047 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1087 Clacu-Chr5:9710322 Clacu05g2516 Clacu-Chr5:33270190 2.20E-70 dispersed
Clacu01g0707 Clacu-Chr1:7719955 Clacu05g1087 Clacu-Chr5:9710322 5.70E-30 transposed
Clacu01g2075 Clacu-Chr1:32491932 Clacu05g1087 Clacu-Chr5:9710322 2.70E-50 transposed
Clacu08g1035 Clacu-Chr8:20382316 Clacu05g1087 Clacu-Chr5:9710322 5.60E-63 transposed
Clacu09g0356 Clacu-Chr9:3073141 Clacu05g1087 Clacu-Chr5:9710322 5.20E-131 transposed
Clacu11g0235 Clacu-Chr11:2115426 Clacu05g1087 Clacu-Chr5:9710322 3.30E-144 transposed
Clacu05g1087 Clacu-Chr5:9710322 Clacu06g1699 Clacu-Chr6:27661850 2.10E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73567 PF00069 Pkinase 5.50E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1087 K27626 - rcu:8265318 1377.46