Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1090 ATGGCAATGGCTTCAGTTTTGGCCCTCAATGGAGTGAAATTGGCTACGACTTCTCAAGCTTATGTGGAAAGTAAGGCTGCAATCGACACCAAGGCTCTGTTATCGGAGCTCTCCCATCAATTCTACGGCCTTAGATGGGTCTCCGGCACCGGCGGCAGCATTGCGATCAAGGTTCATTACCATTCCATTCCCAAGAGACAAAAGCTAACCGCTATGTCGCCTTCTGGTGTTAAGGAGAGAATGGTACGTGAGGACACCTGCATGTTATCTTATGGTGGGTTGATCTTATATTCACCACTTCCAAAACCATTTTCCCACAAACTCCCAAACTGTTTTGACAGTGGACGTCTTTTTATGAAGATGCGCAATGCTGGAGCTGCTATGGAATCGTATCTTGTAACACAAAGGAACCATCATCAGGGTCGGATTAGGAGTATCAAAGGAATTTCAAGCAACATTTCTGTGAAGGCTGGGGATCAAGGTTTAGAAAATAAAAATGAACCATTGCCACGTTGCATAGTTCTTGATATCGAAGGGACTACTACTCCAATATCTTTTGTTACTGACGTCCTCTTTCCATATGCTCGGGATAATGTTGGAAAGCATTTGATTTTAACTTATGAAACTGCAGAAACTCAAGATGACATTAAGTTGTTGCGTTCACAAGTTGAAGAAGACTTGGAAAAAGGAGTTGCTGGAGCTGTGCCTATTCCTCCTGATAATGCTGGGAAAGAGGAAGTCATTGCAGCATTGGTTTCTAATGTTGAAGCAATGATAAAAGCTGACCGCAAGATAACTGCTTTGAAACAATTGCAAGGTCACGTATGGAGAACAGGATTTTCAGGCAATGAATTGGAGGGAGTAGTTTTTGATGACGTCCCAGAGGCTCTCGAGAGATGGCATGCTTCGGGCATTAAGGTCTACATATACTCGAGTGGCAGCAGGTTGGCACAAAGGCTTATATTTGGAAAGACTAATTATGGTGATCTAAGAAAATACCTGTCAGGATTCTTTGACACTGCTGTGGGGAACAAAAGAGAAACAAGCAGTTATGTTGAGATTTCAGAGTCTGTTGGAGTTGATACACCATCAGAGATATTGTTCATCACAGATGTCTGTCAGGAAGCTGTAGCAGCAAAAGCAGCAGGGCTGCAGGTGGCAATCTCAATCCGACCAGGAAACGGTCCACTGCCTGATAATCACGGGTTTCAGACAATCACTTCCTTCTCAGAAATCTGA 1239 43.66 MAMASVLALNGVKLATTSQAYVESKAAIDTKALLSELSHQFYGLRWVSGTGGSIAIKVHYHSIPKRQKLTAMSPSGVKERMVREDTCMLSYGGLILYSPLPKPFSHKLPNCFDSGRLFMKMRNAGAAMESYLVTQRNHHQGRIRSIKGISSNISVKAGDQGLENKNEPLPRCIVLDIEGTTTPISFVTDVLFPYARDNVGKHLILTYETAETQDDIKLLRSQVEEDLEKGVAGAVPIPPDNAGKEEVIAALVSNVEAMIKADRKITALKQLQGHVWRTGFSGNELEGVVFDDVPEALERWHASGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAVGNKRETSSYVEISESVGVDTPSEILFITDVCQEAVAAKAAGLQVAISIRPGNGPLPDNHGFQTITSFSEI 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9752943 9757448 + ClG42_05g0109000.10 Clacu05g1090 248837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1090 412 Gene3D - 28 130 IPR036409 -
Clacu05g1090 412 SUPERFAMILY HAD-like 171 412 IPR036412 -
Clacu05g1090 412 Gene3D - 280 412 IPR023214 -
Clacu05g1090 412 SFLD enolase-phosphatase 171 411 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Clacu05g1090 412 CDD HAD_EP 172 393 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Clacu05g1090 412 SFLD C1.5.4: Enolase-phosphatase Like 171 411 - -
Clacu05g1090 412 Gene3D - 184 279 - -
Clacu05g1090 412 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 184 280 - -
Clacu05g1090 412 PANTHER ENOLASE-PHOSPHATASE E1 166 412 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Clacu05g1090 412 Pfam haloacid dehalogenase-like hydrolase 171 383 - -
Clacu05g1090 412 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 280 412 - -
Clacu05g1090 412 NCBIfam acireductone synthase 171 410 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1090 K16054 - - csv:101221712 696.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1090 Clacu-Chr5:9752943 Clacu11g1984 Clacu-Chr11:30804168 6.00E-141 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g196 . . . . Bpe09g00238 . . Bma13g00945 Cmo16g00434 . . . . . . Cpe06g00682 . . . . . . . . . . . . . . . . Cone9ag0179 . . Lsi04g02064 Csa04g02334 Chy07g00066 . . Blo10g00758 . . . . . . . . . . Cma16g00400 . Car16g00366 . . . . . . . . . Cla05g01005 Cam05g1094 Cec05g1104 Cco05g1097 Clacu05g1090 Cmu05g1041 Cre05g1114 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57